Chr:
Chr3
Start:
31125613
End:
31126554
Strand:
+
Ref_name:
OSA-LNCN4030
Sequence
(OSA-LNCN4030.1):
UGCACAGGAGACAUUUGGGGGAAAAUCAUGAUACACAAACAUACAGAUCCAUCACCGAAAUGCUUGAGAUGAAGAUUCAGCGAAGAUAGCAAAGACUGGUGCUGGUAAGGAAGCUCUGUGUGUGCUCCUCCCAAUUGCCCUAAGCUACCUAAUUCGACCUCAGAAUUCGUGCAAGCAUGAGAGAAAUGGAAGUCCCUAGUGAAUUUGGAGCCCAACCAGGAGUACCAAAAACAGAAAGAAGCCAAUGACGCCGAACUGGAGCCACCGACACUGUAAGGACAAGCAGCCCGGGAGUCGCAUUGCCCACACGCACGCGACGGAAUCUCGCGGCCACCUCGUCCGAUCAUCCUCCUCAUCGGCGAUCGGGGCCUAACAAAGCUCGCCGGCGACAGCGACGGCCGGCCGACGGACACGGCAGCACGAGCAGAGAGCUAGCGAGAUGAUACAGGUGGCCCAAGAAAGCGGGGGAAGCAAAGCUACGACGAAC
Sequence
(OSA-LNCN4030.2):
GCAAGAAAAAAAAGAGAGAGAAUAUGAAUUAAGCAUUAAGUUACAUCCCGAUUCCGAUUUAAAAGAUCCAUCACCGAAAUGCUUGAGAUGAAGAUUCAGCGAAGAUAGCAAAGACUGGUGCUGGUAAGGAAGCUCUGUGUGUGCUCCUCCCAAUUGCCCUAAGCUACCUAAUUCGACCUCAGAAUUCGUGCAAGCAUGAGAGAAAUGGAAGUCCCUAGUGAAUUUGGAGCCCAACCAGGAGUACCAAAAACAGAAAGAAGCCAAUGACGCCGAACUGGAGCCACCGACACUGUAAGGACAAGCAGCCCGGGAGUCGCAUUGCCCACACGCACGCGACGGAAUCUCGCGGCCACCUCGUCCGAUCAUCCUCCUCAUCGGCGAUCGGGGCCUAACAAAGCUCGCCGGCGACAGCGACGGCCGGCCGACGGACACGGCAGCACGAGCAGAGAGCUAGCGAGAUGAUACAGGUGGCCCAAGAAAGCGGGGGAAGCAAAGCUACGACGAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.04%
ME_num:
MEP:
42.07%
HE_num:
HEP:
17.68%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.83
Avg Expression:
9.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.28068489044958 | 0.0365845037055376 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.32273124222143 | 0.00552612359495148 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.42877237086364 | 0.0370011522732341 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.22777946390746 | 3.75966815563965e-07 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -4.21342616931246 | 0.046568214738593 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.90046460567627 | 0.00163789401384876 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.25776530954925 | 0.0259097075536431 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.83254709157643 | 4.67529632132166e-05 |