Chr:
Chr3
Start:
30689369
End:
30694379
Strand:
+
Ref_name:
OSA-LNCN4024
Sequence
(OSA-LNCN4024.1):
UGGUGUUCUAGGCUUCUGCCAUACUACUCCUAAGCUGCAGGGUUCAAUCAUUGACGGUUUCUUGUAGCAUCACACUCACAACCGAUGGAGGAGAAGAAAGAAUCCAAUGAUUGAUGUUUUCUUGUGGUACUGCUCCAGUGUAGAGUUAAAACCUCUCUCUUUCAGGUUCAGGAUGGUGAGCAGCAAGGAAGGGAAUAAAUUCUUGAGGAUUUUAGAUCAGUAGUAGUACAAUUCUUUUAAAAUGGUUAGCUACCAAUUGAUUGCUUUGUUGGGGGUGGUCAUAAUGUACUUUUAGCUUAGGAGUACUGGGGAAACAAAAUCUUGUCGAUAGGGUGUUGUGUACAUCUGCAGUUGGAUGCAUGUUGGAAUCUGUAAAUCUGAAGUUGUUAGAAGAAGCAGCAGCAGCAGCAAAUUUUUACUAGCUCGUUUGAACUUCAGAUGCAAGUGCAAAACUGAGCACUUGAACUUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
76.83%
HE_num:
HEP:
21.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.65
Avg Expression:
9.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.12777571600127 | 0.03609833958258 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.70168777821293 | 0.0180831173260046 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.84157838815362 | 0.0078256739072717 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.73881043502631 | 0.00164515932764693 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.86656966507323 | 1.45234250403111e-05 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.86419089849101 | 0.000109523712660919 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.34733222704751 | 0.000319820362686757 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.37310199226147 | 0.0111836046267762 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.40612063782932 | 0.000687847074687813 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.22422222217282 | 0.0436754865643735 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.9220250485298 | 0.000227552318986231 |