Chr:
Chr3
Start:
30303683
End:
30305061
Strand:
-
Ref_name:
OSA-LNCN4017
Sequence
(OSA-LNCN4017.1):
ACUGGAUUAUGCGACUAUGCGGUAAAGUCAGCUAUGGAAUAUACAUUUUUGGUAGCAGCUGAUUUGUUAAUUAAGAGUUUCCAUGAAUGUAGGAUUUACACAUCCGGUGGUUAGGUGCCCCUAUAUAUAGUGGGGUAUUAGAUCAGUUUGAGAACCCCCCAAACAAUUUCAAUCUACUAUUUUCCUCUUCUUUACAUUCUUGUUAUUCUAUUUUGUUUUCAUGGCUGAGUUCUGUCAACCCUAGAAUUUGGUUAAUCUUUGCCGUUUUGCGCUGAAAAACGGUCGUGCUUCUCCACGAAAGCGAGGAGGUUAUCCUUUGCUAGUUUGCUCGGAAACUAGUCGUUCAUCAUCACGAAGGAGCGGUGGUGGAAGAACUGGAAGGGGUGCAAGCUGAGGCAACAAUGAAAGAGUAAACAUGGUUCAUGAUCGGAGCCAAGGCCUAGGCAACUAAUAUACUGCAUGCAGCAUGCUAAAAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.15%
ME_num:
MEP:
42.28%
HE_num:
HEP:
23.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.88
Avg Expression:
13.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.71286953663822 | 1.61497664938464e-06 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.43182609256579 | 0.000543200379637468 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.2692640830201 | 0.00183805317495222 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.70797463383294 | 9.2047417606273e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.25168535801063 | 0.0496433101106916 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.58022196480628 | 0.000177731598760416 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.62484842898536 | 0.00140388626454782 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.92455281228816 | 5.96990325341282e-09 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.57845004877388 | 0.000199066060433057 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.29290571552216 | 0.00098311772495231 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.48341232311843 | 5.1640901728054e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.62102258836374 | 0.000555873572235833 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.48353397825594 | 5.28641006274022e-06 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.48355770627898 | 5.18764881004218e-06 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.68221098794927 | 2.223561758266e-06 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.20990184263075 | 0.00011142055959637 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.33488535623971 | 8.93875841799871e-06 |