Chr:
Chr3
Start:
30058494
End:
30059168
Strand:
.
Ref_name:
OSA-LNCN4012
Sequence
(OSA-LNCN4012.1):
GCCUAGCUCCAUUUCAGAAACAGUGUUAGUACUAGUAGUAGUAUUAGCCAUACAUACACCUAGCUCGGGAGAUUUAAGAUUUUUUUUCAGGAGGAAAAGAAAAGAAAAAAAACUGAAGUCACCUGCUGUGCUCUGCGUGAAGCUUGCCAAGGAAUGGCCGGAGUUCUGAAGCUGCUGCUCGUGCUGGUCCUUCUGGUCUCGUCAUCGGACGGCUCGGAUGCGUCGAGGCAUCUGAAAGGAGAUGCGAUCGAACGGUCAGGAGCAGCCGCAGGCGAGGCUGUCAUGAUGAGAGCCGUGAUGGUGAGCAAGGCAAAGGCUGGGCACUCUGGCUGCACCUACGACCCCAACACCACCAUUGGACGGCGCUGCCGGCCAUGAGAAAGCUAGCCCAGACACAGCUCAGAGCAAUUAAGCAAUGAUUAUUACUUUGUCUCGUAACUAUUGGUUUGAUUUAAUUUGAUUCUUUCGGUGCUCAUCACUAAAAGAUGCAAUAAACUGUGUACAUACUGCAGAUACAUGGUAUGGCAAUAGUGUGUGUGUGUGUGUGCAAAAAACACAGUACUAGUAGGAGUAGUAUUUUAUAUCAACAGAUCAACUGUAUGUGUACAGUAGCAUUGUUUAUGCUACACCCAGCCAAUUAAUUAAUUAAUUAAUUAACUGAUUUUGCUGUUGCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.52%
ME_num:
MEP:
15.85%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.89
Avg Expression:
2.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.31356702870174 | 1.86863464815157e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.66804452776512 | 0.0170975461377818 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.58634852194554 | 0.010611654984995 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.34745360787195 | 0.00254857466024435 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.9337626901865 | 0.00375831264666974 |
| 6 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -5.1813886737558 | 2.98588387095773e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.33964655792993 | 9.7024257528839e-22 |
| 8 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.31012358871487 | 0.000753717276368566 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.55668963446644 | 0.00523031095111852 |