Chr:
Chr3
Start:
29528993
End:
29536053
Strand:
-
Ref_name:
OSA-LNCN4005
Sequence
(OSA-LNCN4005.1):
AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGCUAAUCACGUAAACGUAAACACAGCAGAUAGCAGAGAUGUUGAUUAGGCAAAACAGUAUAAAAGCCAAUCCAAUAAACUACAUUUAGCGAAGUGCUAUACUAAUGCACUAAUAACGAACUGUUCUUUUCUUAAGAUCGGAGCCAGUAAUGGGUUGUCAGCAGGAGAAGCACGUAAACCUUGAAACAUACCAAGUUCCACAGUCGAGAGUAAACCGUAAUCAACACAAGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
20.33%
HE_num:
HEP:
15.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.76
Avg Expression:
9.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.03984285690689 | 0.0180366632135623 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.31214233028538 | 0.0124063698221184 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.90053429475653 | 0.0358953288952847 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.93875643412041 | 0.0194944116746618 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.0666663751163 | 0.0298134362867081 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.98593639601512 | 0.0110097500610688 |