Chr:
Chr3
Start:
29479243
End:
29479934
Strand:
+
Ref_name:
OSA-LNCN4004
Sequence
(OSA-LNCN4004.1):
CUCGCCGUUCGUCCGCAACAAACCAAACCAACAACACCGAAAACCACCUGCGAUUCUGCCGCCGCACGGCCCCGAGGAUCCGAAGCGAGAGAAAGCGAUGGCCCCGACCGCAUCGAUGCUGUUCCUGAGCUACCACCAGCUGCUGGUCUUCUUGAACAUCUAAAUUAGCUCUUUGCGAUAAUUGCAUAUUAUCCCACAUGUACAUAGGUAGUGCUACUGCUGCUAGUGCCAAGCACAUGCACCUUUUUUUUUUCUUUUUUCUUUUGUUUGCUAUGAUAUUGCCGCUCUGUUCCUGCAUCUGCAUGUUAGCUUGUACAUGGAUGUAUAAUCGAUUUCCUUUUCUUCUUCUCAUUCCUCUUCUUUUUUUUUUCGUUCAUGUGCUAUCUUGUUCUUCACAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.85%
ME_num:
MEP:
8.74%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.93
Avg Expression:
0.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.76865073633255 | 0.0154002382736058 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.71331708128007 | 0.0401093210880356 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.56217805818512 | 0.0424440061976017 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.31931479630473 | 0.0379992943094628 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.03470472585206 | 0.0183163129543184 |