Chr:
Chr3
Start:
28957315
End:
28958009
Strand:
.
Ref_name:
OSA-LNCN3992
Sequence
(OSA-LNCN3992.1):
CCCUGUUUCAUCCAAAUUAAGCGUGAACAAAUCGAUCGUUGCUUGUGAGUCGCUCUGCUGGUUUUUUUUUUGGCUUGAUUGAUGGGCGGCGGUGCUGUGCGCAAGCUGCUGCUGCUGAUUCUCGCCUUGGUCGCCACAGCCGCGCACGCGGCGAGGGCGGCGCCGGGCACCGGCGCGAACGGUGAUGCCGUGACGCGCGCGGCGAGGUCGCUGCUGUCGAGGGCGUCGUGCUGCACGCAUGAUGGCAACACGGUGGGCGCGUCGUGUUGCCCGCAGCAGCAGCUGCGUCCGUAGCCACACGCACGCACGCACGCAAGCAGCAGCGGUGGCACUCCAAGACGCGUCUCUCUCUCUCUCUCAACAUGUCCGUAGUCGAUGUACGUCUGUACAAAAGUUGUUUGGUUUUUGACGAUUCAUUCAUUCAUCAAUUCGUUCAUUCAGACGGUAUGUCAAUCCCUUUUUUUUUGGGGGUUCAUCGGUUCAUUUGUUCAUUCAUUUUUUUUGUGUUCUGUUUUAGUGUGUGUAGCAUUUGAAUUCAAAGGAAUUUGUGUAUGUAUCAUGUGUUACUAUCUCGAAAGGAGCCGUUUUUUCCCCUCAUAUACCUGUGUUAUGUGUACCGCCAUGCCUAAAUUGUGACAUAUGUUUUCAAGUUCAAUUUGGUUGAGAUUAGUCUUUCUACAAAAUAUUCACAUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.74%
ME_num:
MEP:
15.04%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
2.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.99149118557348 | 0.0192377758584636 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.84667304298473 | 0.000216898499075832 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 5.17458516548283 | 0.00187676037515834 |
| 4 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -5.88566529846538 | 0.00132648136928444 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.99782292675869 | 4.53672171559094e-05 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.74428647053026 | 0.00027151009104363 |