Chr:
Chr3
Start:
28608341
End:
28610130
Strand:
.
Ref_name:
OSA-LNCN3989
Sequence
(OSA-LNCN3989.1):
CUCCUUCCCUCCACUCUCCUCCGAUCCUCUCUUCCCCUCCACCUCUACGUCGGCGGCAGGCAGCGCCAGAUGGCAGGGGAUGGGAGGCGGGGGGAGACAGUGGGGAGGAGAGGGCAGCAGACGCGCACGGAUGGGAGGCGGCGGGCAGCGGCGGCGCACACGGAGGGGAGGUGGCAGGCGGCGGGCAAGCCGGAGGGAAAGCGAUAGCCGGUGGGAUGACUUUUAGAUUUUGUGAUGUAAAUUUGUGGAUGAUUUUAGAUAUUUUUUGAAUUUGUAGAUGAUUUUGUGAUGCAAAUUUGUAGAUUAUUUUUAGAUGCUUUUGUGAAGUUGCGGAUGAUUUUGUGAUGUCAAUUUGUGGAUGAUUUUAUUAUUGAGUUCGGUUCAAAAUCAAUAUACAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.93%
ME_num:
MEP:
53.05%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.64
Avg Expression:
1.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.58280408122885 | 0.00024751082870379 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.41211422530064 | 0.000450721128865123 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.01748018941117 | 0.00300663565016955 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.56032637565506 | 0.0459218014243312 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.54677542638663 | 0.00050224905017006 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.18860598672373 | 0.0012058529132201 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.67757270495399 | 0.0112045897044843 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.33221608642455 | 0.000381846263351176 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.57450531938993 | 0.0247537237145326 |