Chr:
Chr3
Start:
28573136
End:
28573606
Strand:
+
Ref_name:
OSA-LNCN3988
Sequence
(OSA-LNCN3988.3):
CUGCCAUCCAGACGGCAAUGCCGAACCAACUUGAGAAUUCGAGCACCAGAUGAUCUGGAACCAGCAAGAAAGAAUCAAGGUUCUGACAGAAUUCAGUUUGGAUAUAAUGUGGUAUUGUUAGGCAGGAACAUUUGGUGAACAUUUAGUAUUUGUAUAAAAAGGAGUUUGUGGGGUUGCACAUCUUCUUUUAGUAAAGUGGUAUUUUGUCUAUUCAAUGUUCUGGAACUAAAGAGUUUGUACUAAAGUAAUAUCCAUGUGGAAUAAAUAGAAACAACUAUUGUACUAUACAUGUGGAAAAGAAAAUUCGUCAAG
Sequence
(OSA-LNCN3988.1):
UGGAAGGCAGAAUUGCUCCAUGAUCUGCCAUCCAGACGGCAAUGCCGAACCAACUUGAGAAUUCGAGCACCAGGUGGAUCUCCUUUCCCUCCUGGUCUGCGCCAAACUUCUGGCAUGACAAUACUACAAGAAAGAAUCAAGGUUCUGACAGAAUUCAGUUUGGAUAUAAUGUGGUAUUGUUAGGCAGGAACAUUUGGUGAACAUUUAGUAUUUGUAUAAAAAGGAGUUUGUGGGGUUGCACAUCUUCUUUUAGUAAAGUGGUAUUUUGUCUAUUCAAUGUUCUGGAACUAAAGAGUUUGUACUAAAGUAAUAUCCAUGUGGAAUAAAUAGAAACAACUAUUGUACUAUACAUGUGGAAAAGAAAAUUCGUCAAG
Sequence
(OSA-LNCN3988.2):
CCAUGAUCUGCCAUCCAGACGGCAAUGCCGAACCAACUUGAGAAUUCGAGCACCAGGUGGAUCUCCUUUCCCUCCUGAUGAUCUGGAACCAGCAAGAAAGAAUCAAGGUUCUGACAGAAUUCAGUUUGGAUAUAAUGUGGUAUUGUUAGGCAGGAACAUUUGGUGAACAUUUAGUAUUUGUAUAAAAAGGAGUUUGUGGGGUUGCACAUCUUCUUUUAGUAAAGUGGUAUUUUGUCUAUUCAAUGUUCUGGAACUAAAGAGUUUGUACUAAAGUAAUAUCCAUGUGGAAUAAAUAGAAACAACUAUUGUACUAUACAUGUGGAAAAGAAAAUUCGUCAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.35%
ME_num:
MEP:
38.01%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.91
Avg Expression:
6.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.23880579452551 | 3.79504625471376e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.47093299170257 | 1.08053966541994e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.58585084543412 | 0.0178846094289171 |