Chr:
Chr3
Start:
28529892
End:
28530121
Strand:
.
Ref_name:
OSA-LNCN3987
Sequence
(OSA-LNCN3987.1):
CCCCGGUCUCUGCAAAGCAAAAGAAAACCCAGCACCACAUGCAUGCGCUGGUGCUUGUGAGCAAGCGAGUGAGUGAUCGACACUGGUCGCAUUGCAUGCAUGCACCCCCAAAACAUGAGGCUGUUUAGAUCUAGCAGCAGAAAGGCAACCGCAGCAGCGAGCCAGCGAGCGAGCGAGCAACGCGAAGCUUGUCGCAAGAUGGUCCUCCUUCCUGCUACUCAUCUCUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.18%
ME_num:
MEP:
12.6%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.50048824125061 | 0.00646158740233405 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.12622150623724 | 0.0152766745144065 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.85920679251418 | 0.0072192854821017 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.70378661650191 | 0.011084380643425 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.95534505545978 | 0.00385799761910035 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.16308510930652 | 0.0134263274675762 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -4.59107748516368 | 0.00912420045392751 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.39512814453461 | 0.00824596478815068 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.93113440454061 | 0.0390730133767582 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.56796379773423 | 0.00341454232429608 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.04362360685154 | 0.00116515432875086 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.55381224183046 | 0.0172916614305282 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.75951405381259 | 0.00371798102098191 |