Chr:
Chr3
Start:
28372696
End:
28375795
Strand:
-
Ref_name:
OSA-LNCN3979
Sequence
(OSA-LNCN3979.1):
CUCCUCGAUCGUGUAUUUCCUUUUUUCCCCUUCUAUAAAUAAACUACAACUCUCUUGCUUUGGCAAUAACCCGAGCGACGGGAAUCCACCAAAAGGAAAUGCGCUGCCUCUUUCAUUUCCUUUACGAGCAACAUUUUUCACAUGAAAAAAAAAACAAAAGCAGCAGCGAACAGACCGUCACACUACAACGGGAAAAAAAACAACAACAAAUGAUUUACCAAAUACGACAAGUUUGAGCAAAAACCAAACCAUGUCGAUUCGUCGAAUCAAACGCCCACAUAUACAUAAACAAGAUUACUCGCUCAGCGUGUUGUCCAAUCCAUACAUAUCUUUAAACAACAACACCAGCAUCUUCGCUUAGGUGAAGAACCGAACCAUUUCCACUUCUGUCGCGAACAACCGGCAGUGGCCGGCCAGAGGCCGUGCGCUGCGCGCAGUCAUUUCUCCGGUCGCCGCGCGGAGAAGGCCGCGUCGCCGCCGCCGCCGCCGCCGGGCGCGCGCGGCCACACAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.59%
ME_num:
MEP:
47.56%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.71
Avg Expression:
1.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.40857739154695 | 2.82289957381987e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.63638657662418 | 0.0418697950415373 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.0113492446695 | 0.00302936910541365 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.42853603508463 | 0.0299064075047947 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.78177457590631 | 1.13589823055271e-13 |