Chr:
Chr3
Start:
28145706
End:
28147753
Strand:
-
Ref_name:
OSA-LNCN3974
Sequence
(OSA-LNCN3974.1):
CUCUUUCGUCCAACGCACUACACGCCCAACAACCGGGAGUGUGCCCGAUCCACACGACACGCGGACGGCGUACGCGUGUGCUCUUAUCCGAAACGCCGCCGUUUCCGGAUGUUUGUGUUACAACCUUAUCGCAGAGACCGAUCGGUGGGUGACUGAUGAAUAUCCCUCCAUUAUUUUACUCAGGAAACUUAGCCGCAAAGUAUGCAAAUUAGUUGGGUCUCAAUGGGCUAUGGCCCCUGUUAUCAAACG
Sequence
(OSA-LNCN3974.2):
CUCUUUCGUCCAACGCACUACACGCCCAACAACCGGGAGUGUGCCCGAUCCACACGACACGCGGACGGCGUACGCGUGUGCUCUUAUCCGAAACGCCGCCGUUUCCGGAUGUUUGUGUUACAACCUUAUCGCAGAGACCGAUCGGUGGGUGACUGAUGAAUAUCCCUCCAUUAUUUUACUCAGGACGGAGGACUAUAUCGAUAAGAACACGCGCGUACGCCUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.32%
ME_num:
MEP:
27.64%
HE_num:
HEP:
14.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.83
Avg Expression:
8.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.04760537394832 | 0.004215873913185 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.25131665009057 | 0.00657996739914513 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.76886807565631 | 3.06442435721871e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.04755411167196 | 8.59208912192005e-14 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.30691694006483 | 0.0153082156674188 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.53880431264949 | 0.0376278198154055 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.54350620368075 | 2.13370176734823e-05 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.33269094917475 | 0.0298996660319598 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.39221711621595 | 3.10380624580507e-18 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.47647672701828 | 0.00669673795059255 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.84955675577992 | 0.000515049883332521 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.47637600444221 | 0.00677223833599615 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.47635764283867 | 0.00671842986397615 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.21691118449134 | 6.81529496548385e-22 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.02768818109573 | 0.0224050155488804 |
| 16 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.04404173318144 | 0.000676975982154282 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.88878405116919 | 0.00182393703898451 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.320961182123 | 0.000168680809252766 |