Chr:
Chr3
Start:
27766966
End:
27771939
Strand:
+
Ref_name:
OSA-LNCN3963
Sequence
(OSA-LNCN3963.1):
GAGGAGGAGGUAGAGUGUGCCGGCGACUGCUCACAUGCUCGAUGUUGGCAAGGUUGGUUUGGGGAAGAUCCGGGUGAGUGCGAGCGGCGGCUGAGGAUGAGGAUAGGAAGGUUGACCAGUCGCUUUUCUCGUACUGCAUCAAGAUACGUCGACAGCAUCGGAGGAGAAAACGUUAGUAAAUCCUUGGUGGUGGGCAAGCGUGAUGGAGGGAAGACAAAACAAGAUGAAGAAAUAUGACUCAAUUCUCUGAUCUUUUUGGUCGCUUGGGAGGUCUGAAAAUAUAGAAAUGACUACGUGUGUAAUGGUGCUACCCCUAAUAUAGAGGCUGCCAACCUUCAGGAGCUAGCCGUUAGGGUUGAGGCAGAGGGCUCAUAGACUUGUUUCUUAAUUGGUGUUUCUUCAUCUUUAUCUUUUCCUCUUUUUUUUCUCGUGUGGUGUCUUGCAAGACUUUUUUUUCAGUUGUUUUUUACUUGCUUAAUGAAAUGAUAUGCAUAUCUCUUACGUGUUCGAAAAAAUAAGUUGCAGGAAAUUAAGAUUUAAUCACAUAAUGAUGCAGGAAAUUAAGAUUUAGUUCAGAG
Sequence
(OSA-LNCN3963.2):
UUUGGUGAUUCUCUAUUAAAAAGUAUUAUUUCUAAAAAAACAUAUCUUUGCUUUGCUUGAUUCUCUUAUUCCCCGCGCCACGUCUAAAACUUUAGAUCGCGAAGAGUCCCCAAGGUUCCUGUGGAAAUUAAUAUAUGUCUCAUACUGCAUCCAAUCUGUUAAGUUUGUGGCCGACCCAAAAGCUUCAAAGUUUGAGGAAAGCAAAUAGGUCCACACAAUUUCCGACCCCAAAACCUUCAAAAUUUGAGGAACGCGACCAAAAAUCAGCAGCGAGAAGAGAUGAAGUUGCAAACAGAAUCAAACCAUACAGGUUUUUUGCCAUAGCGGGAGACAACAACUUCACAGAAACAAAACCAAAUAUUCGACUAGCUCAACAAACACAAGAAACCAGAGUACAGUGGCAUCUUAGCAAACCACCACCUAUACCUUCCAUCGUCGUAUAGGGGAGGACGGGGGAGUGCCACGACCCUCGUCGCCUAUGGAGGCUGCUGCCAUCGCCGUUCCUGCCUAGAGAGGAUAGAGGAGCACUGCCGUCCUUGCCACCUAGGGAGGGCUGAGAAGGGCCGAGGGAGCACUGAUGUCCCGCACUACGGGAUGACCUCCGUUACGCUGAGGGGUCCGGUCGGCUCAGGAAGCGCCACCACUAUCCCUCGUGAGUUGCAAUGAGAGAGGCUAAAGUAGCACCUUCGUCAUCAUUGAACAUAUUCUAUCGAUGAGGACCAGAUUACAUAAUAUCUCGGAUUCGUCAUCAACUUUCAUUUUAAUCCUUUCAUUAUGUGAAAGGUCAUUCAUUAAAUUGUUUUCUAUGCCUACCCUCGAGUUUAUAAAUAUUUUCACAUAAACUUAUUUGCAAUAUUAGAAAUGGGAAUCGAGAUCUCACGGGCUUAUUCUUCACCUUAGGAAUGAUAGAACAAAGGUGCUUUAUUCUUCAACCUCUUCAACCUCACUGGUGUGUUUCAUACGAAGCGAUAAAGUUAUAUUUGUAUUCACCCGUUGCGAAGCACGGGCAUUUUGCUAGUAACUAAUUAAAAUAUUUAUAAUUUUCCUUUCAUCACACUUUUUCGUCUGUCCAAAUUUUGACCGACUCAGUGCGUCAUCCAUAUCUAAUUUUUCGUCCAUCCUCGUCAUCCGCAUGCUUCCGCACAACUUGUAGGAGUCCGCAUCAAAUACAAAUAAUCCACAUCGAUUCUUAAUAGACACAAACAAAAACAAAAUUGAACAAGGACAGGCAGGGAGGAUACCAGGUUCAAUAGGAAAGGAAGUUGGAUGCGGAUUCGAUUUGAUCUCAAACUUGAAUAAAAUUAACCCUAUAAAUACAAGAAAGAACAAGAUACAUAGUAAUUGGUGAAAUCUGACCUGAUUUCACAGAGGCGGGUUUGAUUCAUCUCCCCAUCAAUGGGACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.72%
ME_num:
MEP:
28.05%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.83
Avg Expression:
2.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.71127112601192 | 0.00041151310692721 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.79978257722572 | 0.000240330672105063 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.95257863142295 | 0.000161677876875592 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.83768219655919 | 0.000291782393707673 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.61003050015923 | 0.00271582964415765 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.36891687480644 | 0.00118094793627833 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.03349860469094 | 0.000174266902222312 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.86707203388901 | 3.3122651574688e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.89160383427364 | 0.000146073875787376 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.65051538199049 | 5.08851717989579e-05 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.73046410583781 | 0.00556128449929666 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.79840787183586 | 0.0396021608712277 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.31846523511784 | 9.41676955617341e-15 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.47868672382782 | 0.0446179597219143 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.55932322333289 | 0.000168051463052189 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.80611315309302 | 3.76724043450739e-05 |