RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3958

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

27628830

End:

27629335

Strand:

.

Ref_name:

OSA-LNCN3958

Sequence
(OSA-LNCN3958.1):

AAAAAACAUGGUUGUGCUCUAAUGCUUUUUUUUUUGUGAAAACGCUAUGUAAAAUAUUGAUUUUGCCCCAUUCUUUUUCCUUUCUACCAAUCCCAAGUGUAAGCAAGACCGAGAAUGGACCCAUGACUUCUUAGUCCUGCCUUUUUAGUUUACAACACAAGACAAACUCAGAAAGGUACAAUAGUGAGUUCUUCAACCGGAUAUAUUAUUUUAAUGGGGUAACUAUCUACUAGCAAAUAACUACAAUUAUUACAAUUAUUUUAUGAGAGAAAUAAUCUCAACCAUGAGUAUAUAUCCUAUAGCAAAACCAAGUUUGUUCCGUGGUGUCUUCCAUCAAAUGACGUAUUUUUCGGUGUCCUAUAUAAAAUUUUGUGUUUUUUUUGGUCCACAAGUAAACAGUUGAGCAGUACUGGUGUGAGCAGAGCAGCAACUAAAACCUAAGGACAAAUAAUCUAAUACAGAUCAAGAGCAAGUGGUCAGCACUUAGCCGCAGCCAUUCAAUCAUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

486

LEP:

98.78%

ME_num:

5

MEP:

1.02%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.96

Avg Expression:

0.46

Tip: OSA-LNCN3958 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNCN3958 is not a differential expression ncRNA.