Chr:
Chr3
Start:
27611046
End:
27612030
Strand:
+
Ref_name:
OSA-LNCN3954
Sequence
(OSA-LNCN3954.1):
CUUUCGUGCGGGUCGGAACUUACCCGACAAGGAAUUUCGCUACCUUAGGACCGUUAUAAUUACGGCCGCCGUUCACCAGGGCUUCGGUCGCCGGCUUCCCUGUCAUCAGUUCACCAACUUCCUUGACCUUCCGGCACUGGGCAGGCGUCAGCCCCCAUACAUGGUCUUACGACUUUGCGGAGACCUGUGUUUUUGGUAAACAAUCGCCCGGGCCUGGUCACUGCGACCCCCUUUUGCGAGGGGACACCCCUUCUCUCGAAGUUACGGGGCUAUUUUGCCGAGUUCCUUAAAGAGAGUUGUCUCGCGCCCCUAGGUAUUCUCUACCUACCCACCUGUGUCGGUUUCGGGGCAUUGGAUUCUCACCAAUGUUUUCGUUACUCAAGCCGACAUUCUCGCUUCCGCUUCGUCGACCCCCGCUUUCGCGGUUGCUUCCCUCUAAGGCGGAACGCUCCCCUACCGAUGCAUUUUGACAUCCCACAGCUUCGGCAGAUCGCUUAGCCCCGUUCAUCUUCAGCGCAAGGGCGCUCGAUCAGUGAGCUAUUACGCACUCUUUAAAGGGUGGCUGCUUCUAGGCAAACCUCCUGGUUGUACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.53%
ME_num:
MEP:
24.59%
HE_num:
HEP:
29.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
72.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -4.11107375904738 | 0.0133391047527415 |