Chr:
Chr3
Start:
26615863
End:
26616993
Strand:
-
Ref_name:
OSA-LNCN3930
Sequence
(OSA-LNCN3930.1):
AACACAACACAACUAUAUCAUAUUUACAUUGCAAUCGUAUAAAAAGUAGAGAACAAUCACCAAAUUAAGAUAAAAAAGGAACAUUCAACAUACCAAAUAUAGUAUAAUUAAUAAUACCAGAGUCGCUUAUCCAUGCCGACUGUUUUCUAGGAUACGGGAUAGGCGGGUACCAUAUUACAGUAUACAAUGCAAGCGGACGGGAUAGAGGCAUAUGACAAACGCCUACCGGAUGGCUGGCAUAGUCAUUGGCGUAAAGAAGUGGACAUGCUCGAGACGAAGGGGUAUAUAUAUAGUCACAAAAUCCAAAAGAUGAAACAACUAUUGAUUGUCUCAUACAUGGUCAGGAUAUACUUUAAUUAUCUAUUUUAUGGGUUGUUUAUGGAAUGUUGGGUGAUGGUUAAUAUAGGCAGCUUGGUAUUAAAAGGAUGUUCUUGGGGAUGUGGGCCGAAGCGGGAUGUAGCUGGACCAGCCAACCUACCUCGCCUAAUGAAUAGUGUUGUCGUUGAUGCGGGGUAGGCCAGCCCAACAAUCAUCGCGGAAUUGAUCGGUCGUCCAUUCGUCUAGUGAUGUAACAGGGUGCGAUGCCUACUUUCUCUAUUAUAUAUUGUAAGUUGUUUUAGUUUUUUUUUUCUAAAUCAAAAUUCUCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
76.42%
ME_num:
MEP:
22.76%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.71080005333196 | 0.0340336540478731 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.11345891570203 | 0.0456190151432858 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.68852746720714 | 0.00076861525784554 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.5662559600396 | 0.0427850479841242 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.56628527556086 | 0.0431099022726287 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.56642629400353 | 0.0428521930532848 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.11722982333677 | 0.0283663073353556 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.62576518864456 | 0.00146342291900961 |