RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3924

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

26120450

End:

26121587

Strand:

+

Ref_name:

OSA-LNCN3924

Sequence
(OSA-LNCN3924.1):

CCGGGUUCGCCCGGGAGGGCGUGCUGCGCCGACCUCGAGGAAAAGCCCGCUCAGGCCCAUGGGCCGUCAGAUGGCGUGUGAUUGUAAGAAAUAAGUUCAGAUGGCGUCACCUCCGUCAGACGGGCCAGGUUGCCGCCUCCCCUUUGUCCAGGGCGUUCUGUUCAGGGCACCGCCGGCUGUUCAUCCUGAGCGCCUCGGGGGCCGUCGUCGUCCGCUUCGUCCUCAUUGUUUUCAUUCUCUACCCCUCCGUUCAGCACGCUGGCUUGACGACAUGUACUUGGUACUAAAUUUGUUGAACUUGUUUGAGGUGAUUUUAGAUUAAUCAUUCGCUCGCUCUCCAUUGAUCGUUCUGCUCCUUUUGAGUCAAUCGACGGCGCCCAAGAUUAUUUGGGCAAGAUUGUGCAAGUUGGUUUAUAUCGUGGGAGCUUGUGAUUUGGUGGUUUAGGACUCAAGUAGUCAAUUGAGAGCUUGGGGCCCAAGAUUAUUUGGGUAAGAUUAUGCAAGUUGGUUUAUAUCGUGGGAGCUUGUGAUUUGGUGGUUUAGGACUCAAGUAGUCAAUUGAGAGCUUGGGUGGGCAAUACUGUUGAUUUGUGUGAUUAGGCACAUAAAUAGGUUCAAUGACUGAGAUUGAUAGCUCAGCCUGAAAUUUUCUAUAUGGCAUUGUUAUGGGAAGGGAAUUUAGUCUUUUCGAUGGUAGAACUAGCAUUGCUAGGUGCAUUAUAACAAGAUCAGUGAACCAACCUACACCAUCUUGAGGUUUGCACAUGAUCAGUGAGCAAUAAACAUGUUGUGAGUUAAUACACAAAUACCCUAUCAAUCUAUCUGGCCUGCAAUGAUUGAGCUUAAAAAUCGCCUGAUAUUUUAGAUGCAACUUAUGGGCAAUUCUGUGGCAUUCAGAUUAUUGUGCCAAACUUCAGCCUUUUUCAUAACAGUGUACUAGUGGCAUGACAUAAUUAACUUCAGCCUUUAUAAUAGUGUGAUCAGUACCCUGAUCAGUAAGCCUUUUAAUUGUUGUUGCUUAUUGAUCAGUAACAUGAUUAACUCAUUUUUUUUUCAUUUGAUGUUAACUCAAUCUGUAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

288

LEP:

58.54%

ME_num:

178

MEP:

36.18%

HE_num:

25

HEP:

5.08%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.79

Avg Expression:

2.91

Tip: OSA-LNCN3924 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.963936542079213.13710947197604e-12
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73412.383039620261760.00575508314302456
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73312.165966519980280.0145592685674725
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73422.360728705392640.00179144651342235
5Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day3.455893095622350.0159479539831346
6Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated3.736164001369021.07213959443359e-07
7Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae2.570114205931613.56789060130955e-10
8Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day3.733808815532850.00738359314950298