Chr:
Chr3
Start:
25294865
End:
25298013
Strand:
+
Ref_name:
OSA-LNCN3912
Sequence
(OSA-LNCN3912.1):
UAGCUAGCUAGCGUCUUAAUAUGCAUAUAUGCAUGGUGUGUGUGUGCAUGUACUAGCAGCUAUAGAUCAAGAUAGGUGUGAUUGAGAGAGAUAGGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCCUCACACCAAUACUCUCUGUUGAUGGACAAGUCAAGGUAUGCACCAGUACUCAUAAGCGGCAACAACAGCAGCAGAGUAUAGAAAUAUCUGCACUGAUGCAGGAAUCUGAAAAAAUGGCUGAAGGAAUUGAAGAACCAUCAAUAUAAUG
Sequence
(OSA-LNCN3912.2):
UGUGUGCAUGUACUAGCAGCUAUAGAUCAAGAUAGGUGUGAUUGAGAGAGAUAGGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCCUCACACCAAUACUCUCUGUUGAUGGACAAGUCAAGGUAUGCACCAGUUAUAAUAGGUCGGUCGAGGUCGCGGCUCAUUCCUUACUUCGAGGCAUUGUUUCCAUCUAUAAGAAAACCUCAUCACUUCUGGGGUUUUGAAUCGGUAAAGUGUUGCUCUAGGAUAAUAUGAAUCGGUAGUAGCGUCGCCUACUAUCACUACCGGUUAUUGAACCGAGUAAUAUUGUUAGUUCUCUUUCGUUUGGGUGUGAAAUAAAUGAAAGCAAACCAAUAAUGAUGAGACAAAAUUAAUAGUUUUUUUAAGUGCACGAUCAAACAAAGAAGUUGAUGGUCAUUAAGUAGGGGUGUCUGUGUUUUUCGUCGUACAAGUAGUUGUCGCUUCUGGUCAUCUAAUCCGACGGGUUCGUAUUGUAUAGGAUGCGUAGAGUCCUACUCCAUAUCCCGUUUAAAAAUAUAAGGUCUCCUUGUUUUCCGUAAAUUUAACAUUGAAAAAUUAACUUUAACUACUAAAAAGUAUCACUAUAUUCCUUUUUUAAAAGAAAAAAAAUAUAUAAUGUCAAUUUUGUAGUUGUUGAUAAUAAUAUAUUGGUAUAUAUAAAAGAAAUUAAUAAUUAAAGUAUAAUAUUGAAUAUCAUGUAGAAAUCUAAUACGUCUUAUAUUAUCAAAUGGAAGUAUUUUACCCUAAUCAUCGCUAAUGUGGGUAAAUAAACAAAAGAAAAUUCUUUUUAAGAAGCAUCGUGAAUAUAAGAUUUCGAGCAAGAAACAAAGAUGACAAAUAUUAAAUGGCAUACCAUCACUUGUGCAUAUCUUUAAGUGUUUUGCGGAGAGAAAAGAAGCUGAGAAGGGAAGUGUGCCAACUUGCCAAGAAAUUCUGGAAAUGGGGAGUGCAGCACGUUUGUUUUGUAACCCAAAAAAUUGGC
Sequence
(OSA-LNCN3912.3):
UGAGAGAGAUAGGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAUAUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGGGGAUAUGCAACAGGUGUGUGACAGGGGUAGGUAGAUCUCGGAUCAGGCUUCAUUCCUCACACCAAUACUCUCUGUUGAUGGACAAGUCAAGGUAUGCACCAGGUCGGUCGAGGUCGCGGCUCAUUCCUUACUUCGAGGCAUUGUUUCCAUCUAUAAGAAAACCUCAUCACUUCUGGGGUUUUGAAUCGGUAAAGUGUUGCUCUAGGAUAAUAUGAAUCGGUAGUAGCGUCGCCUACUAUCACUACCGGUUAUUGAACCGAGUAAUAUUGUUAGUUCUCUUUCGUUUGGGUGUGAAAUAAAUGAAAGCAAACCAAUAAUGAUGAGACAAAAUUAAUAGUUUUUUUAAGUGCACGAUCAAACAAAGAAGUUGAUGGUCAUUAAGUAGGGGUGUCUGUGUUUUUCGUCGUACAAGUAGUUGUCGCUUCUGGUCAUCUAAUCCGACGGGUUCGUAUUGUAUAGGAUGCGUAGAGUCCUACUCCAUAUCCCGUUUAAAAAUAUAAGGUCUCCUUGUUUUCCGUAAAUUUAACAUUGAAAAAUUAACUUUAACUACUAAAAAGUAUCACUAUAUUCCUUUUUUAAAAGAAAAAAAAUAUAUAAUGUCAAUUUUGUAGUUGUUGAUAAUAAUAUAUUGGUAUAUAUAAAAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.99%
ME_num:
MEP:
12.2%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.84
Avg Expression:
1.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.10357427745355 | 0.000939138337096864 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.13526065013198 | 0.000494529299827104 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.17059452737422 | 0.00032395630238496 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.50617966240338 | 0.000133851880896788 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.21222958805804 | 4.80166008697851e-08 |