Chr:
Chr3
Start:
24999441
End:
24999780
Strand:
-
Ref_name:
OSA-LNCN3908
Sequence
(OSA-LNCN3908.1):
CAAUGUAUAUACUAUGGAACACCAAUGUGGCCUAGGUGCCUAACAGUGGAGUACAAGCUUGUGGCUGCUAGGUUCAUGAGGUUCAACACACGCAUUAUAGCAACUAUGUUAGUGAGGUUAGAAAAGUAAUUUUCUUUUUGAAAGAAAAAAACUCAAGAGAGGAAACACCAUAGUGAAAGAAUCUGCUAGAUUGCUGUCAAACCAGCAUGCAUAUGCUAAUACUACCUGAAAAUGGUAGAGGCACGUGCAGUGGUUUCAGUAAAAACAAGGCAGUAUUAGAAUUCUAAUCUAGCUAAGGCGAUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.85%
ME_num:
MEP:
29.67%
HE_num:
HEP:
4.27%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.78
Avg Expression:
3.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.52280914653837 | 0.0115754059947801 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.83849740376292 | 0.000648414442020014 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.51641219643786 | 0.0164478963393306 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.20291290064243 | 0.0378459686664004 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.45988819281796 | 0.00793996108278221 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.52415045319422 | 0.0108386678413821 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.17662538326648 | 0.0355861357900136 |