Chr:
Chr3
Start:
24906351
End:
24907104
Strand:
+
Ref_name:
OSA-LNCN3907
Sequence
(OSA-LNCN3907.1):
GUGGCUUUGAAAGAGGUUUUGUCCAGAUGGGCUAUGACAAGUGCAAUGACAUGACAAUGUAUUCGGUCAAAUAUAUUUUUAACUACUAGUAGGAUAGCUUGGCGAUGUAUUCAGUUAAAUAAUGUUUUGACUAGUAGGCAGCUCGUAGAAGCACAAUAGUGGUGACAUGUUCCCUGGCUCAACAAUUGGAGAAAGAAAGGGAGCGGCUGGGCCUGUUUGGGAGAAAUGGAUUCAUGUAUCUGCCAGGCAGACAAUACAUGGGAGAAGCCGAGCCUGUUUGGCUGAAAUUGGUUCAGCAGACACCACCACCUGCUACAUCUUCGUUUACAUCUCACAACUACUUACAAAACUACCCUAAGGAGUUAUUUAAACCGGCUUUUGUUCUUUAGGUGGUAAGAGUACUGAAUUCAAGCCUACAAGGGUUAAAUAGACCAACCAUAAUACUUCCAAGGGAUUGAAUAAAAUUUUUCCUGUUCAUAAAAAUCUAAAAAAGUUGGCAUAAAAAAGACAUUUGUCUAACUGUAGAAGAGAAUAUAUUACUCCCUCCGUUUCACAAUGCAAUCGGCAUCAAUUAAUGUUUUCUGCAAGAUUUAAUUUUGAGGAAAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.68%
ME_num:
MEP:
52.64%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
4.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.02072636633999 | 0.0292698131572874 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.38183530262998 | 0.00108919328425975 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.17006160447468 | 0.000399363738296202 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.4982907538003 | 3.40196205321291e-05 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.92333764240474 | 0.00546591663624271 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.69071162366117 | 0.0254944577307173 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.1198429962781 | 0.000213589674420018 |