Chr:
Chr3
Start:
23984375
End:
23985465
Strand:
.
Ref_name:
OSA-LNCN3886
Sequence
(OSA-LNCN3886.1):
AAUGCAAGCCCAUGGGCUCGUGACAUAUUUUUCCCAGCCUUGUACAUGAUCCAGCCCAUGAUGAGGCCAGCUUCUCCCACAAAUCGGUCCGCUGCAUGCAUGCAUGCAUCACAUGUUAAAAUAAGUCUACUUCAUGUCCCUCAGCUUUCCAUCGGGUGUAAGUCAUAUCUCUGAACUACAUUACAAGAAAUUUUAGUCCUGAACUUACAAAACCGGGUAAAUUAGAUCCAAUAGCAAUAUGGAUAGUUCGUUUCAUUGAUAUGGCAUUCUAGUCAUAAAAAAAAAUAAAAAACAUGUGAAGCCCACAUAUAAAUGGACACCUCACCUUCUUUCUCUACUUCCCUCUCUUCUUCUCUCUUCUCUUUUCUAUCGUCUCCUCCAUGCCAACGAGCUACGCCUAGAUUGCCACCUUGUUGCCUCCAUCUCUACCUCGUCUCCAUCCGCGCCAGCGAAGCCGCCGCCCUCUUCUGGCAUGUCGGCUGGCGUGCCCUUGCCGUCCCCUCCCUUAGUCCCCUCCCUUAAUCCCCUCCGCGUCGCCGCCCUUCUUCUCGGGUGGUCCGACACCCCUAUGCCACUGCCAUAUACACCCUCCCUACCAUCGACUGGCAGCGGGGAGGACGACAUACGGUGGGAAGAAACCUGAUGAUGAGGGCGGCUCAGGCUUAGUGCAGAGGACGAUAUGUAGUGGGAAGAAGCCUGACGGCUAGGCCUCGAGAUCCCAAUGAUGGUGGAGGCAUGAGAGUUGGGGCGUGCGAAACAACAUUAACGGCGGGCGGCCUGACGAUGACUUGCGAGCGACAUGCACAGAGAAGGUCGGGGUAGAAAGGCCGGCGAACGGAUGGAAAUGGUGAUAUCUAGGCACAGCUUGCAGCAUGGAGGAGAUGAGGAAAAAGAAUAGAGAAAGGGCCAGGGGAAGUAGAGGAAGAAUGUGAGGUGGCCACUUACAUGUGGGCCCUGUAUUUUUAAAUUUUAUUUUUGUUGACUAGGAUGCUACGUACGUCAGCGCAACUUACCAUCCAUACUGCUAUAGGAUCUAAUUUAAUCUGGUUUUGUAAAUUGAGGGAUAAAAAUUUUCGGUAUUGCGAUUAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.62%
ME_num:
MEP:
10.57%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.02271892578164 | 0.000413920024648419 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.64731294087389 | 0.000938411648142422 |
| 3 | 9311 // leaf // control--/--9311 // leaf // salt | -2.77971541659866 | 0.0145684668255714 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.75097932901329 | 9.88360505739592e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.8011133581059 | 0.000785642926295572 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | -3.47896066158802 | 2.59358731187937e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.52876078276388 | 0.000902535107326628 |