Chr:
Chr3
Start:
23642717
End:
23643543
Strand:
.
Ref_name:
OSA-LNCN3880
Sequence
(OSA-LNCN3880.1):
CUCGGUCCAUUGGCUCCAUUAAUGGUUCCUACUCAAAGGACAGAGGCACACGGGCUGGGCCUUCACCAUCUUCUUGAUUUUUCAACUUUUUUGGAGGGAAUUUGCAACAAGACUGCGAACCAUUAUAAAUCAGGUAUCUUAUUUUUCUUGAAAAAUCGGGCAUUGUUUCACACAGGGACCAUCGAGAUUUCAUCGGAUAUAGAUAAUUGUUUCACCAAUAAACUUAAAAAGUCUCAUAAUAUUAAAUCAGUGGAACAUUGUUAAAUCAUAGUUGAACAUUUCACUCUCACACAGGGAACAUCGAGAUUUUAUCGGUUGAAACAUCAAUAGAUCCACAAGAAAUUGAAGAAAAAAAAUGUGAAACACCAUCAACAUACCCAGUGCCACAUUCUGAUGCAACAUAAGAAAAACAUCGAAAUGCAUUGAUUGAGACAGUAAAAAAAAAUGGCAAAAAUGUACCGGCCUAGAUCGAUAUGGCUUCUUCCUCCUCUCCUAGGCCAGAUCUCCACCCUCUUCUGUCCAACCGAAGACCGGAUAUAUAGUGAGAACGAGUUGGCCUCCUCCCUCCCUUGCCGGUGCAGAACGGUAUAAAUACCAACACAGGAGCUCUAGCAAGCGGUGCCGCCGUUGCCUUGUACAAUUCACUUAGUUGGCAUGGAUGCUCCAGUGAAGCGGGAGAAGCCGUAGCAUGAUUCGGAAGCAGUGAGCAAGGAGGUUUCCAUGGCUAUGAGAUGGGGAGGGAGAAAAGAAACGGGAAGGCAGGAAGCGCACACAAGCAUGCACCUCGCACGGUUGCCUUGGUGGCUUGGUGGGAUUUGGGGAGAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.21%
ME_num:
MEP:
10.57%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.92
Avg Expression:
1.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.14056801204177 | 0.000172571263179327 |