Chr:
Chr3
Start:
23628608
End:
23630680
Strand:
+
Ref_name:
OSA-LNCN3879
Sequence
(OSA-LNCN3879.1):
CCGACCCUAUGACUAUCAUGCGAACAAACAGCUCAGGCAUUGAACUUAUACUUAAUGAUUGAGGUACAGUGAUAGAACACAAACCGAACAAGUCAACAGCCUCCAAUCAAUAACCUUGGAGAAAAUUAAAGAAUCUGUGACAAACAAAGAAAAGCAAAGGCACACCAAAAUCAUAGCUAUAUGUCGUAGAGAGCAAUUCUGAUGACCGAAACAGAAAUUGAACGAGAAGGGAAAAGUUUUAGGCAGACUAGCAAAAGUAUGUUCUGGUUGUAGGAUUCUCCUGUAGUCCCAUCUAUCUUGAAGCUCCAUAACUCCUAUGCAAUUCCAUCUCUGCAGUGAGCAAGAGACCAUUUAUUCGGGAAGAAAUUCAACUUUGUAAAUAUUUAAUUUCUAAGUGAUGAAUUGAAGAGAAGGUGAUUUAAAGAUUUCACUCAGCAUCAGAAUGGCCUUGUAAAAUUAUGAACUAGACCUGCAGUAAGCAAAGAGACCAUUUAUUUGGGAAGAAAUUCAACUUUGUAAGCAUUGAACAUCUACUAAUGAUUAAGAAGGGAAAAGGGUGGUGAUUUAAGGCUUCACUCAGAUAGGCCAUAAAAAUUAUGUGGAGCCUUGCAAUGACCAGGAGACUUUAUUUUGGAGGAAAGCAGUCUAAGCAUAAACAAAAUCACUUAAAGACUGAGUGGCAUAAAGUCUGGAGUUUGCAGAUAUUAGUAUAGACCGAGGCAGAUAUUGCAAAUUCCAUCUUUGGCAUAGGAGUAUCUGCAAGAACUAUUAAUUACUGACGAAGAACAUGUAAAAGAAAUCAACUUGGUUAUCAAAGAUUAAGCAGGUAAAGGUUGUCGAUCACAAAAAAGGGACUGCUAGCAGCCUGUAUAAUUCCAACUGAUGCGGCAAAUAGGACUCGCUGUGAGCUGCAUAUAUCCAAUUCCUGAAGAACAACCAACUUCCCAAAUCAGACCUUCCAGACAUAAAUCAAAUUAUGCUGACAACUAAAUAAAAUCAAGGGGGAUCAGGACCCAAAAAAACAUUGAAAUGAUGAAAUCCCCAUCUAACAAUCUCCCGUAUAAUCUAUCUCCAAACCACUUAGAAAUCUGCCCAUCUUGCGGAUCUGACCAAAGGAAAUCCAGCCAGGAUAGUUUCAGAACUUCCAUGUCAGGAUAAUUUCAGAACAACCGUGCACUAAUCAAAACAACCAAGAACCAUAAUUCAUCAUGAAUCCAAAACAACCAUGAACCUGGACAAUAACAAUCAAACCUCCACCAAUCCGGUUCAUCUCAACAGUCAUCCUCCCUCCUGCAUCAUCUAGAGGAGCACAAACACAUACCGACAACAAGCCAGAUCAGCGGUCACAAAUAACAACAAUCAACCCAGGGUCUCGAAUCACCUCGCGUGAGGAAUGAUAAGAACCGAUGAUCAUCCAUCCAUAGAUUGAAGUAACGUUAGCAUAUCCACUCAAAUUGCCAAAUCUGAAAUCACCGAAACCAAGUGACUAAAUCAAACGGACCGUAGACAAGAAACGUUCACCUCUUCAACCACACGACGCCACAGGAACCUCCAAUCCUGGAUCAAACCCGCUCCUGCAACCGAACACGCCUAGAGGAGGAAACACGGGGAAAAGGUAGAACACAGAAUUCAAAACCAGAACAAGAUCGGAUCUAAUCGGAAUCAAAUCACCAUAGAGAGAGAAAAAAAAUCAAACACGUCGCAAAGCGAACCGAACAGGAGGGGCUCCCGGAAUCGAGCGUAGACGGGGCUCAUCUCAUCUCAUCUCACCGGCGGUGAUCUGCGGGAACAGAAGGCGGAAACAACAACGAGGACGAUCCAAAUCAACCCGACGAUUCAGAAAAAAAAAGGAAAAAUAAAAAACACAACUCGAGUCGAAUCGAGAGAGGAGAUCGGAAACGGGAAGAAGCAAAACGCGACCACACGCCCCCGGUGAGAGCACGAAGAAGAAGACCGGGGGGACACGAGAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
11.99%
HE_num:
HEP:
85.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.73
Avg Expression:
89.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.38527021154718 | 7.1659199084293e-142 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.05898533520416 | 4.13706229707585e-133 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.03705301723155 | 6.45229413200059e-132 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.86583912562971 | 1.63249149515038e-48 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.49378673506259 | 1.11171235784167e-143 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.03241838815744 | 1.77482331908517e-189 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.8283439550058 | 3.11855963540658e-254 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.12639631325705 | 0.0077811139602277 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.38469019808409 | 5.19715075283157e-57 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.56527677509636 | 2.9424983241459e-10 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.17551671244161 | 2.75876678747378e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.34386614722079 | 3.28865847543791e-08 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.4893639130035 | 1.50132706160045e-21 |
| 14 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.21761987264671 | 6.26187663767922e-18 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.96814881367354 | 0 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.44577780300234 | 2.18639734906944e-200 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.27519643529072 | 0.0042008654128284 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.46094054653891 | 7.50003368287054e-11 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.4018979108814 | 5.27941235249092e-06 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.19058314295664 | 0.00172455958503394 |
| 21 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.6093996860045 | 6.5140685260065e-12 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.35677805252027 | 8.60136260017487e-06 |
| 23 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.6093147185722 | 7.00205346108257e-12 |
| 24 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.60923560691294 | 6.68631270152424e-12 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.73161837829988 | 7.12801212830486e-06 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.5977701011795 | 1.78845777570669e-110 |
| 27 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.48929650001098 | 4.23180838395451e-14 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.64425231058149 | 0 |