RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3875

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

23588650

End:

23589476

Strand:

+

Ref_name:

OSA-LNCN3875

Sequence
(OSA-LNCN3875.1):

CCUACUUUAUGGUAGUAAGUAAAUUCUUAAGAUGCUUCAAAACAAAUUUAAUAUUUCAACAUGGAAUUGAUCUAGCUGUCAAUGGCAUGAAUCACUUCAAAUAAUGCAAGGUCUGAUUUGAGUUUUCAGUAACAAUCUAUCUAUAGCAGGUACUUUGCUCCACAUCUUAAUAGCAGCCAUUUAAAUGUACUUUGAAUGGAGCAUACAGAAUUCAAAGUCAGGUUGAGUGUGUCAUCUAGCCAUUUAUGUUAAAAAUUGGUUGGAAACUUGAAAUUCGAAGUGCCACAAUACCAGAGCCAGGUUAAACUCGAAAUACCAAACUAUUACCAGCCAAGUCCAAGUACCACAACGUGGAAUAGAAAUGUUCAUACAUAUGCAAGGCUACAGAACCAUAUUGGACCAAAUUGUGUAGAAUACCUUGCUAUUAACAGACUCACCAGUUUAGGUUUGUUAAGUGGCAAAGAAAACAUGGUAAAACAAAGUUAUCAUCUUGCAAUACUGCAACUUGGAAAUAGCCAGGAAAAGGAAUAGCAGAUACAACUCACCUAGUGUCAGAUUGCAGCAACACUGCAUCAGAAAACUGCUUUAGGUUCACCAGGCCAAAUCUGCAACAGAAAU

Sequence
(OSA-LNCN3875.2):

AAGAUGCUUCAAAACAAAUUUAAUAUUUCAACAUGGAAUUGAUCUAGCUGUCAAUGGCAUGAAUCACUUCAAAUAAUGCAAGGUCUGAUUUGAGUUUUCAGUAACAAUCUAUCUAUAGCAGGUACUUUGCUCCACAUCUUAAUAGCAGUCAUUUAAAUGUACUUUGAAUGGAGCAUACAGAAUUCAAAGUCAGGUUGAGUGUGUCAUCUAGCCAUUUAUGUUAAAAAUUGGUUGGAAACUUGAAAUUCGAAGUGCCACAAUACCAGAGCCAGGUUAAACUCGAAAUACCAAACUAUUACCAGCCAAGUCCAAGUACCACAACGUGGAAUAGAAAUGUUCAUACAUAUGCAAGGCUACAGAACCAUAUUGGACCAAAUUGUGUAGAAUACCUUGCUAUUAACAGACUCACCAGUUUAGGUUUGUUAAGUGGCAAAGAAAACAUGGUAAAACAAAGUUAUCAUCUUGCAAUACUGCAACUUAGAACCAUAUUGGACCAAAUUGUGUAGAAUACCUUGCUAUUAACAUACUCACCAGUUUAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

248

LEP:

50.41%

ME_num:

238

MEP:

48.37%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.77

Avg Expression:

3.81

Tip: OSA-LNCN3875 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-2.768618683002340.00381069418739643
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.339085609828030.0182000489120917
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.417109494183150.00486575715487871