Chr:
Chr3
Start:
23541663
End:
23542404
Strand:
-
Ref_name:
OSA-LNCN3872
Sequence
(OSA-LNCN3872.1):
GUAAGUCAAAAGAUUCAGACAAAAUUCCAUGCUCUGGUACUCUGAUACAUGUUCUUGUUUGAUCAUGCAAGAUUUCAUCACUGCUUUUUGCCUGGUAAUUACAGCAUCAAUCAGCAAGCUUGGGUGAGUUGGGUCUGCGUCUGAGUUGGCUGUGAGUUCGUUUAUACUGGAAGGUGCAACAACAAGGUGUCACUCUGGUUGCAUUUGGAAGCUAAGAUUUGCAAGCAAAUUUCUACAACUGGCAUCGGAUUGAAGGAACAACUCUACACAGGAUCUCAGCAAUUUCAAAGCUAGAAUGUCCAGCAGUGGGCACAAUUUUUUGCGUGACUGGGGAAAACACUGUCAGUUCAGGUUAGGACCUCGGAAUGCAUUAUGCUGUUCUGUACUUAAUGUAGUUUCUGUGAAAUUCGAAUUUUGUUUCAUUUGUACGAUCUAUUGUACUCUGGUAGGUAUGAUGAUCCAAGCUAUGUGUUGCUACGUUUGUGGAUAAAUUGGACUAGAAUUUUCUUUUCCAGACCAUAUUGGAAUAAAAUAUCAUCAAGUUCAUAAAGAACUGGGGUAUAUACAUCCCUACAUGCUAAAAAAUCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
62.6%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.81
Avg Expression:
5.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.71282998534914 | 7.99151457120373e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.28514035492313 | 2.26245259689888e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.40401702074053 | 8.53479484301816e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.80013646909716 | 1.2766220765009e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.39146092621207 | 5.0034960849657e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.70107027560185 | 1.47236773100798e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.90849016148626 | 1.31861892679955e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.50108988196946 | 6.1938321562317e-17 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.16461259515823 | 2.71535764415356e-12 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.11328235057017 | 2.33489572881514e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.44866790573788 | 4.50216671848296e-22 |