Chr:
Chr3
Start:
23258549
End:
23269205
Strand:
-
Ref_name:
OSA-LNCN3869
Sequence
(OSA-LNCN3869.1):
GCACCUCGAGCUCUAGCUAUCUCUCCUGCCAUGACCGGUCACCACCUUGCCACUAGCCGAUCUCGUCCACCGGCUCUCCUCACACUAAAUCCUCACACCACCGGCAUGGCCUUGCUUCGGUGAUUCCAUUUUUCCACUUUUUCCCUUCCCUUCCUGUCGUAGGCUCUCCGGACCUUCCAUUAUAUUUGAGAGAUGAAGUGAAUAAUUCAAGUCAUCAAACAAGCAUAAUGAAACAUCCGACACCUCGAGAGAGGAAUAUUGGAGACAUUGCUGGGCCCUUAGCCUGCCAGUCAACUUCAGCCUGAGAUGUGCCCGUCAAACCACUCGAAGGCGGCGACCAAAUGUGUUACACAUUCAGGAGACUUGACAAAAAUGGCUAAAGAUCUACAACCUCUCAAAUAUUCCUAACUCAUACUCAUGUGAAUCUAGUUCCCAGGAUGUGCACUAGAUUCACACUUUCAUCUUAAGCAUGAUUACACAUAGCAAACACAACUAAGAUGAAAGAAACUUAAGACUUACAACAACUUAAUAAUUACAUAGGCCGACCGGCCAAAUAGACUUAUUAGAGAACAGCGGAAGCUUGACUACCCAAACACAAGCACACCGACUAGGGGUAUACCCCAUUAAGUUCUCAUCCUAGAAGAAGCAAUCGGAACCCGCAUCACUCAAAGACUAAGACUAAACCUGCAAACAAAAGGUUAUAUCAACAGCAAGAGUCAGUACAUUAAACAAGUUAAUGUACUGGCAAGCACAAGUCAAUCCUACCAUACUACAUGUAAGGCAUAUAUUCAAAGGAAGGCAAUAUGUAGUUCAUUUUCAGCAUAAAGCAAGUUUUGUUUCGCAAUUCUUUUGUAAAAGAGUUGAUGCUUCAAUUAACAAAACAAAUUUUAAUUUCAAUAUUUAAUUCAUCAUAAUUCCAUUAUAAUCAAUCUCCUGUUGUCAUCCUUUGACAACAAGUCAUAAUAUAUCACCUCACACACACACAACUCAACACAUUUAUCAAUUUCAAACCAAUAUCACAUGAUCACAUUUUUAAAACAUAGUCUAUACUCAUGACACAUCACCAAAGCGCUCAUGACCGUGAGCACGGCUAAUUGAUUAGUUUAAAGAACCCUGCAGAGUUUGUACAGCUUUACCCACAUGAUAUGAACUCUCUAGUUUGUUUUGAGUUUGCAAGACUCCAUCACACUCUUCAUGUUGAAUGUGAUCUAGAGGUCAUAACGAAGCCUUUACACUACUUAGAAUCUAGCCUUGCACCAGCACGAUACGUGUUCCUCCAUCCUAGGCAUACUUGGAAAUAUGUCUAGAACCGUUAAGUGGCGGGCCCACGCCUUAAACUUAACGCCGUGGUGGCGGACACAACGGGAAUCCACCCACGUGGCACAAUACCGUUGUAUUGGACAGACUUAGUCACCUAAACUACCACGUCGGGGCAAAUAGGAAGUUCCUCUGAAUCAUCGACUAAUUCCUCAGAAUUAUCGACUAACUCAUACACACCGGCCUACCAGAAUGCAAGGCUAGUCCUAAAUAGAUUAAUCAGCUUAGGCCAUCCCAUACUAGCACAUGUGGAUGUACGGAUAACUUUAAAUGGGUGACACAAGUUCGGUCCUUAUGGACUUGGGCAAACACUUCCCCUAUCGGUAUGCAACUAACACCAUAUGCACACCACUUGCCGCCCAAGUAUAAAAUCACAUUUUACACAUUUUAAUUCGCAAAUACCCAUCAUAUUCAUUUUAUUCCAGCAAAGGUUCAAGUAUCAAAACCACAUUUUAAUUAUAGAUGGAAUGAGCAUUUGCAUAUUUCUAAGCAUGGCUAAGCAAGUAAUUGCACAUAGAGCAUAUAUAAACCCAUUUGAGCACAAAGAGUGUACUCUAACCAUUUCUAGGGGUUCAAACAGCAAGAGGAUCAAUUAUUCAAGGUGGAAUAUGCAGCAAAUAGGUCAUAACUACCUUAACCCAAUUUCAAAUACCGAUAUAGUCUAAGUUCACAUGCAACUUUGCAAACAAAUAUUUUCAUUCCUCAAAUCAUGGGAUUCAAUGUGUUCAAAGGAUGGGAGGAGAAAACUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.37%
ME_num:
MEP:
13.21%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.43824809430272 | 0.0401526253152355 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.86881057729475 | 0.0223397322236288 |
| 3 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 4.90859051968111 | 0.0283619693925632 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.59519195173034 | 0.000106916350766479 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.20762008010478 | 0.0254307565153575 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.61926779077442 | 0.00164720019222094 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.42700114167003 | 0.000939912555118881 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.04610148159801 | 6.19791714968247e-15 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.85139718564689 | 0.0137292405176077 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.56918571469274 | 0.0252473148745835 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.84884734597137 | 0.0465234613776694 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.44393593314627 | 0.038498728364859 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.47409875539299 | 0.00416181131566664 |