Chr:
Chr3
Start:
22255872
End:
22256717
Strand:
+
Ref_name:
OSA-LNCN3845
Sequence
(OSA-LNCN3845.1):
CUGGCAACAAGCAAGGAGGUACACUACUACUAGUAUGUUUCUUAUUUGACUCAUCUUGAACAAUAGCUUAACGAAAUGGGUGAAGCUCCUAUGUGCAUUCUUAGAGUGAUUAAUUUGGACAUAAUCGUGCAUAUCCCGUACUGAGUGUAUGGGGGAAAAAAAUGCAUGGUGCACAACAAAAUCCGAUUUCAUUUCAAUUUUUUCUCAAAUUUAUUUAGUCAUUUCUGAUGCACUUGGCAAUAUAAAUUCAGACAAAGACAUGGCAACAAAAUGGUAACAGAGGAAUAACUGCAAAAUGUAUGCUUAUCGUGCUACAUAUACACAUGUAUGAACCACAGACUUGUCAGGGCCAUGUGCAUCGCUUAGAAAUCUGAACAGGUUUGUGGGUGGGGGUGGGGGUGUAGGAAUGUGAUAUCUAAUCCAAUCACCUUGUAGUAGCUAGGAAAUGUGCUAAAACCAAAACUUAGCAACGAGCCAGACAAAACUGCGACAGUAUGAACGGCAGAUGCUUAAUUAUCUUCCUAAAUAUACAUAUGUAUGAACCAUAGAUUUGUCAGGGCCAUGUGCAUCAGAUAUAUUUCGAACUUUGAACAAGAUUGGGGGAAUAUGAUAUCUAAUCCAAUCACCUACUCCGUAGUUAGGAAAUGUACUAAACACCAAAACUUAGAAAACAGACAGACAAAACUGUGA
Sequence
(OSA-LNCN3845.2):
CUCCCUCUGAAAAUCCGAUUUCAUGUUGUUUUGUGAUGAUUUUAUCGAAACAGCUCUAAUCUUAUAAAAAUUAUUGUUUUUCUGAAUCAGGUACACUACUACUAGUAUGUUUCUUAUUUGACUCAUCUUGAACAAUAGCUUAACGAAAUGGGUGAAGCUCCUAUGUGCAUUCUUAGAGUGAUUAAUUUGGACAUAAUCGUGCAUAUCCCGUACUGAGUGUAUGGGGGAAAAAAAUGCAUGGUGCACAACAAAAUCCGAUUUCAUUUCAAUUUUUUCUCAAAUUUAUUUAGUCAUUUCUGAUGCACUUGGCAAUAUAAAUUCAGACAAAGACAUGGCAACAAAAUGGUAACAGAGGAAUAACUGCAAAAUGUAUGCUUAUCGUGCUACAUAUACACAUGUAUGAACCACAGACUUGUCAGGGCCAUGUGCAUCGCUUAGAAAUCUGAACAGGUUUGUGGGUGGGGGUGGGGGUGUAGGAAUGUGAUAUCUAAUCCAAUCACCUUGUAGUAGCUAGGAAAUGUGCUAAAACCAAAACUUAGCAACGAGCCAGACAAAACUGCGACAGUAUGAACGGCAGAUGCUUAAUUAUCUUCCUAAAUAUACAUAUGUAUGAACCAUAGAUUUGUCAGGGCCAUGUGCAUCAGAUAUAUUUCGAACUUUGAACAAGAUUGGGGGAAUAUGAUAUCUAAUCCAAUCACCUACUCCGUAGUUAGGAAAUGUACUAAACACCAAAACUUAGAAAACAGACAGACAAAACUGUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.57%
ME_num:
MEP:
36.59%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.69
Avg Expression:
2.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.67650359259374 | 1.56759271745256e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.09578456783814 | 3.66014443822275e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.22905127019595 | 0.0130701504904323 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.48817171942066 | 3.03104875250604e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.42381408871876 | 0.015720004045477 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.20312632622262 | 0.0288250624192141 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.80887827267926 | 1.62664091652583e-05 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | -2.73721745697553 | 0.00355577668103062 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.86028965260073 | 0.00134983181775613 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.45430341744474 | 2.80628035893896e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.69674347392009 | 4.98974190287537e-05 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.94549298130854 | 0.0042674472084307 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.45232266122612 | 5.6096508016305e-05 |