Chr:
Chr3
Start:
21288278
End:
21290051
Strand:
.
Ref_name:
OSA-LNCN3831
Sequence
(OSA-LNCN3831.1):
AGCCGAGCCAGAGCUAGCCAACGUGCUUAUCCAUACCACUAUGCAUGUCCUUAUCCACUACACAGAGCCACACCCAGUCGAUCCCCUCUCCCCCUUCUCUUGUUUCUCCCCAACCUUCUCUCCCCUCUUCGCGCUCCUUCCCCACUCCCUCGCUGCGCAUCCUCCCCUUCCCUCUUCGUUCGCCACCCCUCCCCUCUCCCUCCCCUUCUCUUGCCGCCUCCCCUCUCCCUUCCCUACUCCCUUGCUGCCUCCCUCUCCCUUUCCUGUUCUUCCCUUUUCCUUCUUCCCUUCCGGCAGCGGUGGUUGGUGGAGGUGACCCCGCUGCCACCAAGCCGCUGGUCCGAAGGGGGUACUAGCGCCGGAGGAGCCGCGGCACCGGCCCCAUCAUCACUGGCCUUGUCUGCGCCUUCAUGCCAUGUGUUUUUGUGUGUUUCAAGAUCGUGUUUUAUAUAUAUAUAUGGGGAUGAUGUUAUUGGAUGGGAUCUCGGGUGGUUGUCAGGUGUUUUCGUGAUUGUGCAACAGCCUCCAUCGCUCGACACUUUUGCCGCCGGCCGCGAGCGCUGGUGCUCCGUGUAUGUCUACCUCCACCGGCUGUCUUUUUUUUUUUUGUUUCAUUGAAAACUAUAGGUUCUGGUUGUUAGGCAAGAACUGGCCACUAUAAUCUCUAUAAGUGUCGUGAACCGUCACCUUUGCCCUUGGGUAUUGGUGUGGUGCCGUUAAAUUGGUUCCGACUAUAAAACCAACAUCUAUGGUCGGUUUCCAACCGGUGCCAAUAGAGGGGUCUGUACUAGUGUUUACUUAAUGUCAUUGUACAUCCAACAAACAUCCUAGUUAUAUCCUAUUGCUCAUAUUUAGGCUGUGUUGGUUGAUUUGGGUUGGAAACCCAUCUCCUGCGCACAGAAAACGGAACGACCCAUUAGCAUAUGAUUAAUUAAGUAUUAGCUAAUUAUUUUCUUCAAAAAUGAAUCAAUAUGAUUUUUUAAGCAAUUUUCGUAUAGAAACUUUUUUAAAAAAGUACCGUUUAGCAAUUUGAAAAGUAUGCGGAUGAAAAACAAGGAAGAUGAGUUGGGAAAACUGGGGAAAGAACUCAGCCUUAAUUGAUGAUGCACUAAGUCCAGGCUUGUUCUUUUUUUUCGAUAAUAAGCACUGUCUCAGACACGCGCCACUGGAAAACUUGUCACUCCUUUCGUACUUUCCUGCAAGCCACGCACUAGACUGAUUAACAUGGACCAAACAGGACUCUCGUGAACAUAUAGUAUCACUAUAGUACACUUGCAAUCCAAAUCCCACUAACUGUUAGUUUUAUCUUGGCCUUCUAUGCUAAUGGGCUUCACUAAUUAUGUGCAUGUGCACGUGACAUGACUUGUUGAAUCUUGAUACCAUACCCUAUGCUACUAAGUCCAAUUAUCUAGCGCUCCAUGCAAGAGGGUAGGCAUGUGUAUUCAUGCCUAUACCUGUCUUGCCCAUUUAUCCAUCUAAGAGCGACUCUAGCAAGGUGUCACGCCCAGAAAUUCCCGAAUAGAAUUUCAAGCAGAAUGUGCAUUAAAAUCCCCGUCCAGGACCGGCCGGGGUACACAAACGACAAUGUUGACAUUCAGAUCCACGUCUUACAAACAUCAUAAAAGUCUUACAUAAAUGCAGCGGAAGAAAAGAAAGACAACAAGAGCUAAGCCUUGACUUGAACUGCAGCGGGAACACCACUCCACAGGCAUCCUCGACGGCACGGACGAAGCCUACUCCUCGGAGAACCCGCCAUCGGACACAUACUCGAGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.46%
ME_num:
MEP:
52.03%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
4.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Azucena // root // control--/--Azucena // root // Al | -1.80731840049154 | 0.0183915646117612 |
| 2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.53732787924357 | 0.0148278750033278 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.4577690903047 | 9.17530865018279e-07 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.68491667885311 | 0.00696675947282694 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.52451483953229 | 0.00231226304385292 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.50555249917871 | 0.00411702521179153 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.95981559715768 | 8.66915773334353e-10 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.04618653591981 | 0.00485477070277692 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.98464958945787 | 0.0321961799454311 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.09220518521084 | 0.00133486592576032 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.80987191668037 | 0.0492412480883411 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.43213532309195 | 0.000707172833020765 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.80979367164365 | 0.0499328206925731 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.80971401719054 | 0.049394551296227 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.70119004444995 | 1.80634507659082e-06 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.60108915711994 | 2.73916110349051e-07 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.80719607140606 | 0.017114212073616 |