Chr:
Chr3
Start:
21036894
End:
21038654
Strand:
.
Ref_name:
OSA-LNCN3826
Sequence
(OSA-LNCN3826.1):
GCGCGGCCGGCGGCUAGAGCCGGGGCAGGUGGCGGUGGGAGCGGCCGACGAGCUCGGGCGGCGGCUAGGGUUUCUUUUUCUGAAUUCUUUUUGGAAUUUUUUUUUUUGCGAUUUUUUCUCUUUGCCCUGGCCGCAUGCAAAGAUGGCGAUCUUUGCAAACGAUUUUGUGCAUGCAGCUAGCCUAGCCGCAUGCGAAAAUCGUUGCCGUCCAUUUGUAAAAACGUAUUUUAUAGUAGUGAUAUAUAAUUAAAGAAACAUUAAUUAAGUAAUAGAUUUGUCAUGAAAAAAUUCAUACAAACAUCUAAUCAAGUCUAAUCUAAAAAUAAUAUACCAUUAAAUAAGAUCAUUAGAAGUGACAUAAAACGGAAAAUACUAUAUGGCUUUGUUUCACACCAUACGUACCGAACACUAACUAACACAAAUAAAUACGUCCCUUAUAGCAUCUCCAACAGACUAUCUAAAUUAGACCCUCCAAACACUCAUAUAGCCAACUCUCCAAUUGAUUUAGCAAGUUAAUCUCGUUGCUCACUACAACAGACUCUCCAUAUAUCCUCUCUAUUUUAGGUAUAUGACAUUGGGACCCCACAUGUCAGUCUCUACAUCCCAACUUCUUCCCCUUCUUUCUCCCCCUCUUCCUCUUCUGCUAGGCAUCCUUGACUCCUUGGCCCUCUCUCUCUAUCGCGGCGACGGCGGGCGGCGACGACGGGCGGUGACGACAAAUCCGUGCGACGGCGACUAAAGAUGGCAACGGCUGGCGGCAACGGCGGGCGGCGACGACGGGCGGCGACGGCGGACGGCGAUGACAAAUCCAUGCGGCGGCGACUAAGGAUGGCGACGGAUGGCGGCGACGGCGGGCGGCGACAACGGGCAACAACGACGGAUGGCAACGACGGCGGAUGGCGAUGACAGAUCCGUGUGGCGGCGACUAUGGAUGGCGACGGCUGGCGGCGACGACAAAUUGGGAUGAUGAGCAGCGACGACGGCGGACGACGACGACAAAUCCGUGCGGUUGCAAGGCAGGCUUGCCGCUGCCCCGCCGCCAUGCCCUCCCUCCCACGCCGGUGUUGGUGGCCGAAGGCGGCAAAUACGGCAGAGGAGGCCAGGGCCGACCGCACCGGCGUCCGCCUCUCCCCAUACUCCACUGCAACGUGGUUGAGUCCGACAUGGUGGCCACGCCGGCGGCGGACGGAGAGCCCGGUGGCCGCGCCAUCGCCGGACACAUCAAGGCUGCAAGUGCUCCAAGACCCCCCAUGGAUUUGGUUGAAAUGACCAUCAAUCGAUUCGGUUGUGCAGGAUGGAUCGGUUGAGAUGAUUUGGGUUCGAUUUGUUGUUGUUGAUUCUCAUCUUCACAUGGCUGGCAUUUAGCCGCGCAGUAUGCAGAGGGAGGGAGGGCACGGGCAGAUCAGGGAAUGGUAGAGAUGGUGGGGAUUGAGGGGAAAAGGAUGGUGGGGCCCACGGAUGGCCAGUGGCUGAGGGUGGCCGACAGCUGGCCAUAUUUGGCCAUCUUGAGCCCAUCUUUGGCCAUUGCUAUAUUUUAACUAGUGGGAUAGCCAUUCAGUUGGACUGAAUUUUUUUAUAAAAUUAUUAAAAUUUAGCUUAGAGAAUGGGAUGGAGAAGCUGUUGGAGAUGCUCUUAGAGUGGGAUACGUACCUACGCUAGCUAGCACUGCUCUCUUUUGCACUAUAUGCAGUUAGGCACCCUGCACGGGUAAAUAUAGUUGCUACACUAUUACACCAUUAUCUCAAAAUAAGUUUAUUUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.88%
ME_num:
MEP:
33.33%
HE_num:
HEP:
36.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.85
Avg Expression:
28.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.97150933047152 | 0.0222608347966583 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.47070295520957 | 0.00406848737221561 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.08369791314121 | 0.014944114246807 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.70051703254006 | 0.000468998667052637 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.71230405057821 | 0.00130206522358807 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.71241114865608 | 0.00131626112433816 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.71250376463813 | 0.00130881447809983 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.76257620276363 | 3.79781496514234e-18 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.72684661113908 | 9.95528897425298e-22 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.40389520752473 | 1.27680217138685e-09 |