Chr:
Chr3
Start:
20966812
End:
20967219
Strand:
.
Ref_name:
OSA-LNCN3825
Sequence
(OSA-LNCN3825.1):
AUUAUGAAUGUUAAUAUAUGAUGAAGUUUGUUGGUGUGGGGAGUUUGGAAAGUUUUGGGUGGUUUAACCGGAUUAUAAUUACCCCCUUAUACCAUGGAAAUGACAUAGUUGCGUCCAUCCACACGAUCAAGUAAUUGGACUUAGCCUAAUACAUUGUCCCACUAUAUGAAAGACUGUUGGUUGGCUCACUAGGAGCAGGAUUGGGGUGAACGCAUGUGUAAGGAGGUUGGGGGCAUGGUUCACAACGGUGGAACCCGUGAAAGCAGCGACCAAGUAGCCUUGCUUAGGCCCAGCAAGUGCCCGACUGCUAGGACGGAUCAAUAUCCCACUCGUGCAGUAACUAGUAGUAAGUGGGACCUUCGAACGGCUCUGUUGUUCUCAGCCCAGCUAGCUGUGAGCAUCGUGUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.15%
ME_num:
MEP:
24.8%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.92
Avg Expression:
5.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.517881333755 | 0.00198609112649313 |
| 2 | 9311 // leaf // control--/--9311 // leaf // salt | 3.57355773561019 | 0.0036126023733525 |
| 3 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.40067541703452 | 0.000578850766327671 |