Chr:
Chr3
Start:
20964705
End:
20967898
Strand:
+
Ref_name:
OSA-LNCN3824
Sequence
(OSA-LNCN3824.1):
UCCCGCCCCGUGGCGCCCCCACAGCCGCCGCCGCCAUCGCCUUUUCACGGCCGCCACCGCUAUUCCUCCGCCGCCGCUGUUAAGCCGCCGUCGCCCACCGUCUUCGCCGCCGCCGCACAACGCCGCGCCGCGUCACUCGCCACGCGCCGCCGCAAGCCGACGCCGACUACCGAGCCGCCCCUUUGCCGCCAAUCGGAAGCCGACGCUUGGCGCCGCCUCUCCGCAUUCCAACCGACAUCGUGCCGUGCCAUCGCCGGUUUUCCCUCCUCCACCGCCUUUGCCGCCUAUAAAAUCCGGCGACCCCUUCCAUUUUUCCCUCAUCCAAAUCGGAGUUCCCUCUCUCCCUCUCUCCUCAAAUCCUCCAUUUCUGGCUGGCCGCCGUUCCCCUUUGCCCUUCUCCACCGUCGGCCGCCGUCCUUGCCUCCCCAUCGCCGGCCGCCGCCUUUUCCCUUCCCAGCGCCUCCUCCGACCACCGCCGCCAUCGAGCGCCGUCGGCCACCGGAGCACCCCGCCCCUUGCCGCCCUUCCUCUGUCUCCCUCUCCUCUGUGCCGAUACGAGGAAGAGGAAGAAGAAGAAAAGAAGAAAGAGGGAGAAGACUGACCUGUGGGCCCCACCUCUGAUAAAAGGAAACGUGCUAACAAGGAGAUCAGAAGGAAGCGAGGUCUAUGGCAACGACAAGUUUGUCUAGGCUAGUCUACACUCGAGCUUUUGCCUGUGGAGUUCUUUGAAUUCUUUGGACUUUAUUAGCUGUAGUUUUAGUAGUUGAAGAGUUUAGGAGUUUAAUAGUUUAGCACUUUGAAUUUUCUUGUAUUUCAAAUAAGGAUGUAUUAGUUUGGAUCUUUUCACCCUUUAACAGUGGUAUAAUUAGCCUGUAUAAACAAAUUUGUAUAAAUAAUCGAAAGCUGUUCAGUAUAUCAAUCUGUGCGUGAUCGAAAUCCUGGACGAUCACGAGUGGAUUUUCGAGGCACCAAGCCUAAAUUGGGUGUCCCCACAUUAUAUUAUUAAGACAACUUUGAAAGGAGGCACCACGUUCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.51%
ME_num:
MEP:
5.28%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.94
Avg Expression:
1.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.56147760746994 | 0.0334733374112271 |
2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.17842074606419 | 0.000158409401452483 |