Chr:
Chr3
Start:
20266144
End:
20267712
Strand:
-
Ref_name:
OSA-LNCN3812
Sequence
(OSA-LNCN3812.1):
ACUGCAGCAUUCUUUGAUUUUUUAUAUUUUCUGCGUCUGAUUUUCAUUUUGGCAAUUUUGAGACCGACCAUAUUCCGUUUAUCCCCUUAUUAGUAAUUGAUUAUUCCUUGAAAUGUGUGAUGUUGUUCUAUACUUUGAACAAAUCGUAAUAGUUUCUUUUUUUUUUUGAAAUUACACAGUACAACACAGACACUCACAACGCACGUGCACUUACUCCUAUGAACGUACGCACGUAAACCCUACCCCUAUGAGCAUCUUCGAAGACUAGGCCGGCGAAUCCUUGAUAUUGACGAAGUCACCACAGGCGCCUCGCUGUCGACGGGUACGUCGCCUACCACUGAAAGCACAACACCGUUAAAUCCUAGAAAAUUCGCUCUCAUAGAGAGUCGAACCUAGAACCUUAGAUGCUACUGAGGCUCUCGUAAACACUAGGCUACAGACUACAGGCCCUUUCGCAAAUCGUAAUAGUUUCUCCUACACGCGACAUCAAUAGGCCAGUAGUAAAAGAGACAUGUGACUUCAUGCUCUGUCUGAUACUAGCUUUGACGGUCGACAUUGUCAUACAAAACUACAAUGGGUUUCAAGUAGGGCAUCAUAUCGACCUCAUGACAAAAAUUACAUAUACAUGGUUGUUAUUCAAAAUUUUUAACUGAACAGGGGGUUUAGACCUGAAAUAAUUCAAUCAAAAAUAUUGGAAAGUAAUUAAAUACAUAUCACCAGUACUGACCACUUCGUUGUCAAUUUGUUACAUUUUGGAAUAUUUCACUCUUAGUAUAGGCCCUAUUCAUGUUGCCAGACAACGGAGCAGCUGCAACCACUAUGAGUACACAGGCACAAGUAAGCUACCUGACUGCUGCAGCCAUUGCCGCAGAACUGGAUGCCCAACAACCGCGUAAAAAACUACUCAAUCCAUUUUAUAUUAUAAGACGUUUUGAUUUUUUUAAUCAUUUUUCUAAAAUUUAACUAAGUUUGUAGAGAAAUAUAGCAACAUCUAUAACACAAAAUAAAUUAGUUUUACUAAAUUUAAUAUUGUAUAUAUUACGAUAAUAUGUUUGUUUUGGAUUAAAAAUAUUGCUAUAUUUUUCUAAAAAAAUUCAGUGGUGUGAAAACGGUAUCAUUAUGUUUUCACUGAGAUGAUGUCAUACUAUCUCCUUUAUAUUUUUUUCCUUGCAUAUUUGUAUAAGUAAUGAUUGGAAGUGCACGGGUGAUAUAUCGGCAACUACAUGUUGUCCUGAACAGGAAACUACUCAUGGUCUAAUUUUGCCACUAUUGGAAUGCUAUCGUGGUGAAUCCACUAGAAUCUUUUAAUGUUUUCACAUGAAGCCAAUUCAAAAUUUUUACUAUAUAUGUUAUUUCAGACCGAGUAUAGUUCUAAUUUUUUUUUUCAAACUUCCAACUUUUUCAUCACAUCAAAACUUUCCUACACAUACAAACUUCAAACUUUUCCGUCAUAUAGUUCCAAUUUUAACGAAACUUCCAAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.09%
ME_num:
MEP:
25.61%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.90
Avg Expression:
9.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.17962416417484 | 0.0215358402071844 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.35870716006532 | 0.0108453154344946 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.09655844471839 | 2.90933449989444e-05 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.54382193341844 | 1.84302001407661e-05 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.6958899396512 | 2.56541675890497e-12 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.83560710876656 | 0.00745620894812095 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.14472478019532 | 0.000166445403847507 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.25222261004649 | 5.53457776432773e-06 |