OSA-LNCN3805


Function Link


Basic Info

Chr:

Chr3

Start:

19861593

End:

19867259

Strand:

-

Ref_name:

OSA-LNCN3805

Sequence
(OSA-LNCN3805.1):

AGCCCAUCUACUAAAGCCCACAGCAACACAACCCACCAAACCCACCUUCUUUCUCUCCUCUCUUUCUCUCGUUCUCUUUCUUUUUCUCUCGCUCUCCCCUGCGCCGCCGCAUCCUCAGGUCUCGCCGCCGCUCCACCCCACGCCGGCCGAUGCUCCCUGCCUCCGGCAGCCGCCCCGCAGCCGCUGCCGGCCUGAAUCGGUUUCGUGGCUCCUCAUGAGUCUAUCCCCAAACUAACCCUAGCCAUCAACCCCUCUCCAAUCGAUGCUGCUGCUGGCUACUGCUCUCAACGACUGGGAUUGGAAUUUUCCCAGCCCCGGCGCCCCUGAUCCAAGCAUGACUCAGACCAGCCGUGUCUCCCCGAGCUCCUUCUCUCUGAUCCCUUCAUUCCCUACUUCUGUGAUGUGAUCUGAUUGGUGUUCUAUUAUAUAGUUACCUACUGUGAAUUUCUAUGCUUGUGAACUAGUCCUAAUGACCAACUUGAUGAUGCUAUACUCAGAAUUAUCCUGCUAUCUGUAGGUUCUAGAUUAAUUGAUUUGCUAUAAUUAGAUGAUAACCAUAUGCUAUGGAUGGAUGAAUGAAUGCUUGCAUAAUAUAUCAUAUGAAAAUGCAGUACUGAAACUAAAAACACACUAACAUGAUUUUGUCCUUAUAUAUAUAUGCUUACAUGUAGAAUUAACUGAAAUACUGAAAUUGUUAAAACACUAACAUGAUCAGAUCCUUAUGUAUAUGCUUUGCAUGUUGAAAUAACCGAAUUUCUGAAAUUAGUAACACAUCAAGCGGAUUAGAUUCAAUAAUAAAUCUUAUUGAAUGGUGAUGUAACUUGCAUGGUUCUACACUUGAUGAUCAUGGCAAGAUGUAUGCUAUAGAUAAUGGAAUUAUGUAAAUGUUGACUAAUUUCCUUAAAUAAUUUACUGCUACUGACUAUAUGUACUACCUCUUGCCUCUAUGUAAUUUACUUGAUUUGAAAUAUUCAUGCAAGGAGAAAUUAGACUAUUUGAUGACCUAACUGUAUGCUAUGGUUUUUAUUCAGAUACUAUACUCUCCUGUUUCCUGACAAUUUUAUAAACUGCGAUUUCAUAUACUUAAACUGAAGAUAUAUUUGCGCACACUAAUAGAUGCCAUUCUUUUCUCUAAUUAUGCUCUGCUCCUACGCAUGCAUUAAAAAUUCAUCCUAUGACGGCUUUACUGAACCUUGAUUUAUAUCACUGUAUACAGAUAUAAAUCCUUAACUCAAAUGCGCUUAUAGAUCAUCCAAGAUAAUUCUUGCUGUCAACUAUGCACUGAGAUGGCUGAUCUAUACUUCAAUUAUCCUACUAAGAGUCCAUUAAAUUUUAGACGAUACUAUCUUGUCCAAUUACUCAUAAAAAUUAUGUCUUGCUUAUUGAACUAAGGAUGCAUAUUCAGUAAUAUAACCCCAACACAUAGUACUAGUAUAUGCACAUAUCAACAUGGCUGCCAUCUACUGAGGUUCAUUUUUCAGGUUUAAUGGAUAUAACUAUGUGCAUGCACAUAACUCCUAAACAUACUAAUAUAUGCAUCAACCAAGAAUCAUGCCAUGAUGUGAUUUCCCUCUCAUUCUUAUUUCAGGAUUACCUUGUCAAUGACUCUAGUGUGGCUGUGAAGAUUGUGUGGUUUCUCCCUCUCUGGUUCUACCGCUUCUCCUGCUGGGACUGUAACUUCACUCCUUUAUUGGAACUGGAACACUUGAAUAUUUCUCCUCCUUGCUCAGGCACCAGCUGCUCCUCCAGAAACUAUAGUAAUUGGGCAUUUUCUUCUUCUUCUUGAGCUGGACUGCUGGAACACCACUUGCUCCUUCUUCAGCCAUGAUUGUAGGUUUUUGUUAGCGUGCGCACGGGACAGGACGGUGCCAGAUCUAGCGAAUUGCGG

Sequence
(OSA-LNCN3805.2):

AGCCCAUCUACUAAAGCCCACAGCAACACAACCCACCAAACCCACCUUCUUUCUCUCCUCUCUUUCUCUCGUUCUCUUUCUUUUUCUCUCGCUCUCCCCUGCGCCGCCGCAUCCUCAGGUCUCGCCGCCGCUCCACCCCACGCCGGCCGAUGCUCCCUGCCUCCGGCAGCCGCCCCGCAGCCGCUGCCGGCCUGAAUCGGUUUCGUGGCUCCUCAUGAGUCUAUCCCCAAACUAACCCUAGCCAUCAACCCCUCUCCAAUCGAUGCUGCUGCUGGCUACUGCUCUCAACGACUGGGAUUGGAAUUUUCCCAGCCCCGGCGCCCCUGAUCCAAGCAUGACUCAGACCAGCCGUGUCUCCCCGAGCUCCUUCUCUCUGAUCCCUUCAUUCCCUACUUCUGUGAUGUGAUCUGAUUGGUGUUCUAUUAUAUAGUUACCUACUGUGAAUUUCUAUGCUUGUGAACUAGUCCUAAUGACCAACUUGAUGAUGCUAUACUCAGAAUUAUCCUGCUAUCUGUAGGUUCUAGAUUAAUUGAUUUGCUAUAAUUAGAUGAUAACCAUAUGCUAUGGAUGGAUGAAUGAAUGCUUGCAUAAUAUAUCAUAUGAAAAUGCAGUACUGAAACUAAAAACACACUAACAUGAUUUUGUCCUUAUAUAUAUAUGCUUACAUGUAGAAUUAACUGAAAUACUGAAAUUGUUAAAACACUAACAUGAUCAGAUCCUUAUGUAUAUGCUUUGCAUGUUGAAAUAACCGAAUUUCUGAAAUUAGUAACACAUCAAGCGGAUUAGAUUCAAUAAUAAAUCUUAUUGAAUGGUGAUGUAACUUGCAUGGUUCUACACUUGAUGAUCAUGGCAAGAUGUAUGCUAUAGAUAAUGGAAUUAUGUAAAUGUUGACUAAUUUCCUUAAAUAAUUUACUGCUACUGACUAUAUGUACUACCUCUUGCCUCUAUGUAAUUUACUUGAUUUGAAAUAUUCAUGCAAGGAGAAAUUAGACUAUUUGAUGACCUAACUGUAUGCUAUGGUUUUUAUUCAGAUACUAUACUCUCCUGUUUCCUGACAAUUUUAUAAACUGCGAUUUCAUAUACUUAAACUGAAGAUAUAUUUGCGCACACUAAUAGAUGCCAUUCUUUUCUCUAAUUAUGCUCUGCUCCUACGCAUGCAUUAAAAAUUCAUCCUAUGACGGCUUUACUGAACCUUGAUUUAUAUCACUGUAUACAGAUAUAAAUCCUUAACUCAAAUGCGCUUAUAGAUCAUCCAAGAUAAUUCUUGCUGUCAACUAUGCACUGAGAUGGCUGAUCUAUACUUCAAUUAUCCUACUAAGAGUCCAUUAAAUUUUAGACGAUACUAUCUUGUCCAAUUACUCAUAAAAAUUAUGUCUUGCUUAUUGAACUAAGGAUGCAUAUUCAGUAAUAUAACCCCAACACAUAGUACUAGUAUAUGCACAUAUCAACAUGGCUGCCAUCUACUGAGGUUCAUUUUUCAGGUUUAAUGGAUAUAACUAUGUGCAUGCACAUAACUCCUAAACAUACUAAUAUAUGCAUCAACCAAGAAUCAUGCCAUGAUGUGAUUUCCCUCUCAUUCUUAUUUCAGGAUUACCUUGUCAAUGACUCUAGUGUGGCUGUGAAGAUUGUGUGGUUUCUCCCUCUCUGGUUCUACCGCUUCUCCUGCUGGGACUGUAACUUCACUCCUUUAUUGGAACUGGAACACUUGAAUAUUUCUCCUCCUUGCUCAGGCACCAGCUGCUCCUCCAGAAACUAUAGUAAUUGGGCAUUUUCUUCUUCUUCUUGAGCUGGACUGCUGGAACACCACUUGCUCCUUCUUCAGGUUGGUCUCUCUGCCGUCUCACUUCAGCAUCUUCUUGCUGCUAUGGUUUAUAUGCCUGGUUGUUUUUCUAUGGCUGCUACUAUUGAGAUAUGGUGUGACUGUGGUGCCGGACUACUAGCUACUGCUCUGCCAUUUCUCUCUUUUGAGGUGGUUUUCCGGACGAACUGCUUGCUGCUACUGCUGUUGCGGCUGAGGCUUCUGCGCCAUGGCUGUGCUCUUGCUGUUGCUACUACUACUGCAACUGCUUGCUGCCUGUGUUGAUCUGCACGACCAAACCGAGGCUAAUAUAUGUGUGAAUUUUUAAUGAAAGCUAAGUGACUCACCAGCUCGCAUGCCGGUUGGAUAAGGGCUUGCUGCCACCUCAACAAAGCUGGUUCGGUGGGAUAAUCUAAAGCUAUAUUUACUAAUUUCCCAAUCAAUAGAAGUUUUGUAAAGUCUAACAUGUUUGGUGCUUUUGCACUUGAGUCCCACAAGCUUGGUAAAUUGGAGAUUACUACGAGUUCAGAGACUGGGAUGCAAUUGCCCUAAAACUCAAGAGUUUUUCUGAAAAUAAAUAAUUAUUGAAUCUUUGACUGAGAUGGUUCAGUUUAUGGUGUGAUAUCUAUAAGCACCAUGUGUUGACGUUUGAUGUCGUGAUUCCGGUAUUUGCAUAGUAUGAGGAUCGUUGGUAACAGGGUAUACGUGAGACUGUGGUAAAACAGAUGGGUACGAGGAUUUUUAUAUAGGUUUAGACCCUUGAAUUGUCAAGUAAUAACCCUACUCCUGUUGGCCUAAGCCGGUCGUUGCUCUUAUUCAUCAUAAUCACACCAGUACAAUAUUUAUAUUUGAGGUAGCCUAUCUAACUGUUGUUGACUUGGCGGCAUGUCUUGGCGUAUAUUGGCUUGUAUGUUGAUCUUGUGUCUUGAUCUAUUGUUCUCUGUUUCCUCUCCUCCUAGGGGGCCUUGUAUUUAUACCCAUAGGUGUCCCCUUGUCUAAGUAGAACUAGUAAAACCAAUAUGGAUACAAUCCGAGUAGUCAUUGUCGUUUCCAUGUAGAACUCUAUUCAUCCUUAUGCGGAACUCCUCCUAUAUCCGAAGUUUGUUUCCGUAUAAGACAUGGUAUGUGGUGGGUCCUGCCGAGAUUUAGUCAACUACUAUUAGGUAUGUGGUAUCCAUAACCCUAACACCAUGUAUAUGCACAAUAUAUG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

105

LEP:

21.34%

ME_num:

45

MEP:

9.15%

HE_num:

341

HEP:

69.31%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.67

Avg Expression:

30.99

Tip: OSA-LNCN3805 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.051903732603065.70314542456629e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.159880393913610.000940117506486072