Chr:
Chr3
Start:
19386099
End:
19386613
Strand:
.
Ref_name:
OSA-LNCN3798
Sequence
(OSA-LNCN3798.1):
CUUAGUCUUUGAGUGAUGCGGGUUCCGAUUGCUUCUUUUAGGAUGAGAACUUAAUGGGGGUAAACCCCUAGUCGGUGUGCUUGUGAUUGGGUAGUCAAGCUUCCGCUGUUCUCUAAUAAGUCUAUUUGGCCGGUCGGCCUAUGUAAUUAUUAAGUUGUUGUAAGUCUUAAGUUUCUUUCAUCUUAGUUGUGUUUGCUAUGUAUAAUCAUGCUUAAGAUGAAAGUGUGAAUCUAGUGCAUAUCCUGGGAACUAGAUUUACAUGAGUAUGAGUUAGGAAUAUUUGAGAGGUUGUAGAUCUUUAGCCAUUUUUGUCAAGUCUCCUGAAUGUGUAACACAUCUGGUCGCCGCCUUCUAGUGGUUUGACGGGCACAUAUCAGGCUGAAGUUGACUGGCAGGCUAAGGGCUCAGCAAUGUCUCCAAUAUUUCUCUCUCGAGGCGUCGGAUGUUUCAUUAUGCUUGUUUGAUGACUUGAAUUAUUUACUUCAUCUCUCAAAUAUAAUGGAAGGUCCGGAGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.7%
ME_num:
MEP:
4.47%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
2.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.51735830905618 | 0.000153067880554044 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.62179510825104 | 8.45112119267449e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.72989531769383 | 2.20168487881615e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.71225179229588 | 0.000275746124388273 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.96869128029906 | 5.74485855288259e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.13601982877565 | 3.42164407069381e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.88379267868904 | 3.08759462128652e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.5440622353728 | 3.36311301531444e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.02255170717015 | 5.868008243242e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.47182525531625 | 0.000169066705798433 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.33170997383759 | 1.43929267011535e-05 |