Chr:
Chr3
Start:
18085563
End:
18087555
Strand:
+
Ref_name:
OSA-LNCN3771
Sequence
(OSA-LNCN3771.1):
CAUGACCCACCCGGUUUGUUGGUUUUUUUCCAAUUCAACAGCCUCCUCUCCGAUACUCCAAUCUCCCUUGUCCAGGCCAAGUGGCCAACUGCCUACCUGGGUGCCUAUAUAACCGCCAAUCCUCUCACUGACGAACGCCAAGAGAAGGGGAAAAGUAAUCCUCCAGCUAAACUAGAAAGAGAUGAGCUACUACGGUCAGCAGCCGCCGGUGGGCGCGCCGCCGCCGCAAGGGUACCCGGGGAAGGACGCGUACCCGCCGCCGGGGUACCCGCCGGCCGGCUACCCACCGCCGGCGCAGGGGUACCCUCCCCAGGGAUACCCUCCGCAGCAGGGGUACCCGCCGCAGCAGGGCUACCCGCCGCCGUACGCGCAGCCACUGCUGCCUGUUGGAGGCUUGCUUCUGAUCAAGUCUGUCCGUGUGACCAAGCAGUCUCGAUCGGACACAAACCCUGGGAUUGAUGUGGAAUUAUUGUUCCUUUGAAAAGAAAUAUAUGGAAUUGUUGGGAUUGGCAUGUCGUGUUGGUUACUUUCUUUGAUAAGAUUAGUAGAAUUUUUCUACCAUCACAGCGUACAAUUAUGUGUGUAUUGCCUGUUCACCAGAUAAGUGUAUACCCCCUUAACGAAAUCAUUGUAUUUGAUGGAUUAGUUUAUCUAGUUUACUGUAAUAUCUCACUCUCCCCGUGUUAGUGACUACAAAUCGAGCCUCACGUCGAGACAUCUUUUUUUUCAGACUUUAAACUCUAUGAUUUCAUCUCAAAGUAUAUUCCCUCCAUUUUAAAUUACUUAUCGAUCGUUUUAUGUUUGUCCUACACAUGGCAUUUCAACAUGACUGCUCAAGAACCCAGAUGCCGCGAAGCUGCCAUGUUGCUCGCACUGCACCCAUUGAUGCGGCUUCUACUAAAGAAACAAAACCACAUUGGUGAUCGAUUACUCACAUAUAUACCAUACACAAUUUAUACAAUGUACAAUCGCUUUUGAGGUUAUCAUAGAAAGUUAG
Sequence
(OSA-LNCN3771.2):
UUGGUUUUUUUCCAAUUCAACAGCCUCCUCUCCGAUACUCCAAUCUCCCUUGUCCAGGCCAAGUGGCCAACUGCCUACCUGGGUGCCUAUAUAACCGCCAAUCCUCUCACUGACGAACGCCAAGAGAAGGGGAAAAGUAAUCCUCCAGCUAAACUAGAAAGAGAUGAGCUACUACGGUCAGCAGCCGCCGGUGGGCGCGCCGCCGCCGCAAGGGUACCCGGGGAAGGACGCGUACCCGCCGCCGGGGUACCCGCCGGCCGGCUACCCACCGCCGGCGCAGGGGUACCCUCCCCAGGGAUACCCUCCGCAGCAGGGGUACCCGCCGCAGCAGGGCUACCCGCCGCCGUACGCGCAGCCACCGCUGCUGCCUGUUGGAGGCUUGCUUCUGAUCAAGUCUGUCCGUGUGACCAAGCAGUCUCGAUCGGACACAAACCCUGGGAUUGAUGUGGAAUUAUUGUUCCUUUGAAAAGAAAUAUAUGGAAUUGUUGGGAUUGGCAUGUCGUGUUGGUUACUUUCUUUGAUAAGAUUAGUAGAAUUUUUCUACCAUCACAGCGUACAAUUAUGUGUGUAUUGCCUGUUCACCAGAUAAGUGUAUACCCCCUUAACGAAAUCAUUGUAUUUGAUGGAUUAGUUUAUCUAGUUUACUGUAAUAUCUCACUCUCCCCGUGUUAGUGACUACAAAUCGAGCCUCACGUCGAGACAUCUUUUUUUUCAGACUUUAAACUCUAUGAUUUCAUCUCAAAGUAUAUUCCCUCCAUUUUAAAUUACUUAUCGAUCGUUUUAUGUUUGUCCUACACAUGGCAUUUCAACAUGACUGCUCAAGAACCCAGAUGCCGCGAAGCUGCCAUGUUGCUCGCACUGCACCCAUUGAUGCGGCUUCUACUAAAGAAACAAAACCACAUUGGUGAUCGAUUACUCACAUAUAUACCAUACACAAUUUAUACAAUGUACAAUCGCUUUUGAGGUUAUCAUAGAAAGUUAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.89%
ME_num:
MEP:
15.85%
HE_num:
HEP:
78.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.76
Avg Expression:
46.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.318840966791 | 0.0355089263515153 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.15438638160261 | 0.0086939631163109 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.68587643318184 | 0.000510689370663232 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.6097335100668 | 0.0174228429677697 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.08168942515976 | 0.00629371522689303 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.78759820509275 | 0.00388427615955168 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.4619445916535 | 1.44753408206051e-05 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.02107940941541 | 0.0451479944223552 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.87767420599156 | 4.77516695524637e-05 |