RiceNCexp:Browse

OSA-LNCN3762

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr3

Start:

17748718

End:

17749841

Strand:

Ref_name:

OSA-LNCN3762

Sequence
(OSA-LNCN3762.1):

UCUUAUUUAAAAAAAUUAUGAAAAAAAUUAAAAAGAUAAGUCACACAUAAAGUAUUAAUCAUGUUUUAUCAUCUAACAACAAUGAAAAUACUAAUUAUAAAAAAAUUUCAUAUAAGACGGACAGUCAAACGUUGGCACGGAAAUCCAGGGUUUGUUUUUUUUUUGGGACGGAGGGAGUAAGUUGAAGAAUCUCCAACAGCCUCUCCAAGUGACUCUCCAAGCUAAAUUUUAGCCAUUCCAGUUUAAAAAAAAACGUCCUCCAAUAGCCUCUCUAACUUGACCAAAACCCUCCCCCCACUAGCCAAACUUGGCCAGCCAAUAGUCACCGACCAACCAUGGGCCCCACACACAUCCCUCCCAUCUCCUCGUCGGCUCAGAGAGGCACAAAGGAGAGAGGCGCAGCCCGCAGCGUCGACGACGGCACGGACAAGAGAGGCGCCGGAGCUGCCUCCCUCCGUCCGCAUACCUUGCAACCGCCGCCGUCGCCGUAGUCGUUCGUGUCGUUGAUAGCCGCCGUCGCCUCCCAGCUCGCGUGCACGGGGAUCCGCUGCUACCGUCGCCUCCCGGCUCACGCGCGCGGGUAGCCGCCGCCGCUGUCGCCUCCCACCUCGCGUGCACGGGGAUCCGCCGCUGCCGCCGUCGCCUCCAGGCUCGCGCGCGCAGGUAGCCGCCGCCGCCGCCGCCUCCCGCCUCGCGUGCACGGGGAUCCGCCCCAAUCGUCGCCUCCUGCCUCACGCGCGGGUAUCCGCCGCCGCCGUCGUCUCCCGCCUCGCUAGCGCAUCGUCGAUAGCUGCCGUCCGGGAGAAGAGAAAGAGAAAGGGAAAGAGGAGGAAGAAGGCAAUUGAGGCUGAUAGGUGGGUCCCACAGUUAUUUUGGAGAUGUAAAUAGAGAGACUGUCGGAGUGAAUACCUAGUUUGACUACCCAAAUCAAUUGAAGAGUUGGCUAUAUGAGUAUUUGGAGAGUCUAAUUUGGAGAUGCUGUUGGAGAUGCUCUUAGACAUCUGUUUUGUUCGUGCCACAUUUAUAGUAGGAUUUCUUCAUCAU

Sequence
(OSA-LNCN3762.2):

CACACAUAAAGUAUUAAUCAUGUUUUAUCAUCUAACAACAAUGAAAAUACUAAUUAUAAAAAAAUUUCAUAUAAGACGGACAGUCAAACGUUGGCACGGAAAUCCAGGGUUUGUUUUUUUUUUGGGACGGAGGGAGUAAGUUGAAGAAUCUCCAACAGCCUCUCCAAGUGACUCUCCAAGCUAAAUUUUAGCCAUUCCAGUUUAAAAAAAAACGUCCUCCAAUAGCCUCUCUAACUUGACCAAAACCCUCCCCCCACUAGCCAAACUUGGCCAGCCAAUAGUCACCGACCAACCAUGGGCCCCACACACAUCCCUCCCAUCUCCUCGUCGGCUCAGAGAGGCACAAAGGAGAGAGGCGCAGCCCGCAGCGUCGACGACGGCACGGACAAGAGAGGCGCCGGAGCUGCCUCCCUCCGUCCGCAUACCUUGCAACCGCCGCCGUCGCCGUAGUCGUUCGUGUCGUUGAUAGCCGCCGUCGCCUCCCAGCUCGCGUGCACGGGGAUCCGCUGCUACCGUCGCCUCCCGGCUCACGCGCGCGGGUAGCCGCCGCCGCCGCCUCCCGCCUCGCGUGCACGGGGAUCCGCCGCCGCCGCCGUCGCCUCCCGGCUCGCGCGCGCAGGUAGCCGCCGCCGCCGCCGCCUCCCGCCUCGCGUGCACGGGGAUCCGCCCCAAUCGUCGCCUCCUGCCUCACGCGCGGGUAUCCGCCGCCGCCGUCGUCUCCCGCCUCGCUAGCGCAUCGUCGAUAGCUGCCGUCCGGGAGAAGAGAAAGAGAAAGGGAAAGAGGAGGAAGAAGGCAAUUGAGGCUGAUAGGUGGGUCCCACAGUUAUUUUGGAGAUGUAAAUAGAGAGACUGUCGGAGUGAAUACCUAGUUUGACUACCCAAAUCAAUUGAAGAGUUGGCUAUAUGAGUAUUUGGAGAGUCUAAUUUGGAGAUGCUGUUGGAGAUGCUCUUAGACAUCUGUUUUGUUCGUGCCACAUUUAUAGUAGGAUUUCUUCAUCAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

170

LEP:

34.55%

ME_num:

316

MEP:

64.23%

HE_num:

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

2nd_leaf

Tau :

0.70

Avg Expression:

2.38

Tip: OSA-LNCN3762 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-2.56454074509388	0.000175086540337823
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-2.02827335441952	0.000662341536209653
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.32775335463414	2.11661375289194e-06
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-3.21541910892433	0.000472399292963619
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-3.1782923982441	0.000161415430395607
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-3.59370845602044	5.17804893388027e-05
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.44705691266941	2.22418421595263e-05
8	Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated	-1.49482408241837	2.41510007854173e-05
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-3.23275134095189	3.1008316106297e-06
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-2.62112027969012	2.03696630837482e-05
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-2.73383529974237	9.98382821371506e-05
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-2.25679005346288	1.33462896216855e-05