Chr:
Chr3
Start:
17413979
End:
17414615
Strand:
.
Ref_name:
OSA-LNCN3755
Sequence
(OSA-LNCN3755.1):
UUUCCAUGUUUUGACAUUAUCAAAUUAAAACCAAUAUCAAUAGUCAUACACGUAUUGGUUAUGACAAAAAACUGAUACUUACAUGUGAGUCAUUUGUGUUGGGCGUAUAAAAACCAGUAUUUAUAUAUGAGACAUCAGUGUUAUUUAAUUAGUUUAAGAAAAACGCCACCGAUGAAUCAAGCUGAGAUGACAUAAGACACAAGUUGACUUAUAAGCGACCAGUUUAUCUUCCACCAAAUCCUCUUCUCUUCUCCACCCGGUAAAGGUGCAUCCUCCCCCAGCGGCAUAUAGCGGGUGGCCUCCCACCAGCAAGGGCUCGAUGGCAGUCGGCGCAUUGGACGGCGAUAAGCAGUGACAGCGGUAGAUGCACUGGUUGGAGAACUUCAUCACGAAGAGUAGUAGCAGUGACGGUAUGUCGUUCUCUUCCUUCGAGAUCUGUGUUCUUGGAUGCUGACUAGUAUAUGUUUGAUUCUGUGAUAUUGUUCUUCUAUGUUCUUGGAAACCUUUCAAUCACAGAUGUUGAUGAUACACAGUAGCAGGACCGGCACUAAGUGUUAUAUAUGCAUGCAUGUACAUAAGUACGGUAUACCCUAUGUUUCCAUCCGAUUGAUCGGAUGUUGUAUGCACGCAUGCUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.28%
ME_num:
MEP:
6.71%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.40803284744284 | 0.0192953441141987 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.85591691181445 | 0.0063154341684974 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.2693675236749 | 0.00145559423352547 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.29430987726826 | 0.0199983769645832 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.70109386232779 | 0.00197560658969809 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.30609167905124 | 0.0191356712690168 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.5598514309468 | 0.000573895603711477 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.31622447843818 | 0.00032108969995145 |