Chr:
Chr3
Start:
16301139
End:
16307876
Strand:
-
Ref_name:
OSA-LNCN3742
Sequence
(OSA-LNCN3742.1):
UUAACCCCCCCGUUGAAACGGAGUUUUAAUUUGGUCGUAAAACUGUACAUCGUUGGUUAUCGACUUGAUUAUAAGGUUAAACUAAAUAUUUUAGAAAAUACAAAUAACAAAUACUAGCUUAAUUAAUUAUAACAGGUAAUCUCUAGGUAAUGCAGUAGAAGAAAGUUUCCUCAAAAAACUUAUUUUUAGAGGUGUAGAGCAAAUAAUCGGCAGAAUAAUACGGUGAAAUAUUACUUUAAUUGGAACGGGGUAUUAGUGUUCUGAAUUGAUCAAAUCAACAGUAUAAAUUGUUCAUCGGGUACCACCUUUUCCAUUUCAAACUGUAUAGAGUUUCACCUUUUUUUUUUCAUGGCUUAAGUGGCAAAGAUAUAUAUGUAUAUCUUUUAAAACUUUCUUCCUGGCACAAUAAAAUUAGAGACUCGAUCAUAUAUUCAUAUGAACUAUAGUAUCGUAAUCAUAAAUUCAGGUUCAGUUUAUUAGUAUGUUCUUAAUUCUAUCAGAAUAACAGGAAACUCAUCUACUACCAUUGAUUAUGGCCUUCAUAUAUAUUGCAUUUUAUUUUAACAGCGAAUGUUUUUUUUUGAAACCUAUUAGUAACAGCGAAUGUUUCUUGUUGUGCAGAAUGGAUCUAGGAGAAAUUGAAGGAUGGAAUGCCGAGUGGUUCUCAUGAUCGUCGUCGAUAAUAGGGAGAGCAACUCAUCAAAGUUUUGAGCAGGAAUUGCUCCCCUUUGCUGACAUGCAUUUCACUGUCUUAAAUAAUGAAAACCCUUGCGUGACUAAGUACUAAUACUGAGAGUCAGAAGAUCAAUGUCAAAGAUUUUGAUUAUAUGGAUCAGCCGUGCCUUUACUUAACAUGCAUGUAUUAGUGUUGUUGAUGUAUAUGUGUUCUCUGUCUGGCCUAAGUUAGCACUACAUCUUGGUAACUGUAGUUUGUGAUCUGAACUUCUCAAGCUUAUAAACCAAUAUAAUGUGUAAGAUAUAUAUAUAUAUAUAGAGUUGCCUAUGCUGUCCUAUGCUCUCAGAUCGACUUGUUAUUUGAGUCGUUGUGCUCCAUCAAGAUAUAUAUAUUCUUGCAAUCAAAUUAGUCCUGAUAAACACCUAGGGGUCUUCCGGCUAGCUCCACAAUGUGGUGGGCUAGAUGACCUGGGUUUGAAGCCUCACCUCUUCUAAUUAUUUAAUAUUAUGUCAUUCCCUAAUAUUCGUGUCUUUUUUCAAUCAAAUUAGUCCUUCAAUUGAUCUAAUUAAAUUUUAGUUAACAUAUAUGCUGAGAAAAAUUCUACGUCAUGAAAACCUGCACCACUUGUGUUUAAUGGAUAGCGCGCGCGAAAUAAUAUGCUUAGAAUGGGAUUAAUCAAAAUUACUUAUAAUGGAGUUGUUAAAUGUUAAUGAUAUACUGCUUUAAUAUAUAUCACAUUAAUUAAUUAAUGUAACUAAAUGGUGCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.98%
ME_num:
MEP:
27.85%
HE_num:
HEP:
60.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.96
Avg Expression:
661.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.75806979073037 | 6.28398599691709e-56 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.13096642606677 | 1.46719832001703e-25 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.5726613072871 | 2.60159430596677e-48 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.89610828533408 | 2.1122693573831e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.62750261627908 | 1.00166077162057e-48 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.85304599022522 | 0.00479134065304751 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.10468782210792 | 9.84651442298588e-17 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.70635961752513 | 2.18374141241246e-30 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.93998222679111 | 4.85723134233102e-34 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.96013019952257 | 0.0351020828964456 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.63850343412297 | 0.000145473361927775 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.40356606129872 | 2.18670533945663e-50 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.5234469844903 | 3.56032534683362e-24 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.29728582386934 | 1.63116930505917e-25 |