Chr:
Chr3
Start:
16246669
End:
16247857
Strand:
.
Ref_name:
OSA-LNCN3740
Sequence
(OSA-LNCN3740.1):
AAAAUAGAUUUUCAGUAACAGGGUGUAAUAGCCACCGCCAUAAAAAAUCAUGGGAUUGGCAUAAAUCCCGCAUUCACACACGGUGAGACCAAGUCCAACGCAUACACUCCAACCACUCCUCUCCCUUCCAUCCCACUUCUCCCAGAUACACCGGCCAUCUCUCCUCUCCCUUAAUCAUGGGUGGUGUGCGGCGGCAAGGAUAGCUGAGGUGGCAAAGCUCGUGGCGCGUGGCGGCGGCGCGACGGGGGCUUGCGGCAGUGGCGCGCGGGCGGCUCACGGCCGGAUCCGCCGCUGACGCCGACGGUGGAGGUCGGAUCCGCCGCCGCGAUGACGUUGGAGGCCGGAUCCGCCGCCGCGACGAAGGGGGAGGCCGACGAGGAGGGUUGGUGCGGAUCCGCCAGCGUCAGUGCUCGGGCUGUCCUUCACGGCGGUGAAGGAGGUGGAUCCAGCGGUGGACGACGACGACGGCUCCCGCGACGACGAAGACGGCUACCGUGACGAUGACAACGAUGGCUACGGCUUCCUUGCGACCCUUCUUGCUCGCCGGCUCGCCGCUGUACCGCCACAAGGUGCCUCAAGGGAAGCCCGCUUGUGAUGAUGGUGAUGGUCGUCGCCACCGCCGUGUGGAAGUUCAUGGCGUUCCUGAACAAGGCGGUGGCCACGGCGAGGUGUCGUGGGUGGCGGCCAAGGAGGUGGUGCAGCUGUAGCGAUUGGAGGAGGACGCCGGAGUUUACGCUACGUCGAGUCCUCCAUGGAUUUGGGAUUUUGGGAUUAGGGAUUGGGGAUUUUGGGGUUUUUUUUUUGCAGGAAUGUGAAUUGUGGAUUUGGGAUGUGAAUUGGGGAAUGUGAAUUGUGGAGUAGAUUUUGAAACGAGAACAUGAAGUUUGAAAUUUGAUUUGGGAUGUGAAUUGUGGAUUUGGGAUGUGAAUUGAGGAAUGUGAUUUUUAUUUUUUUUCUCCGAAAUUAUUUUAGCUGGUGGGUCAUCUUACUUGCCGCCAGCGAAACUAGCUUUUUGCUGGCGGCCACCCACCAUCCACCGCCAGUGAAAAUAUGUUUUCGCUGGCGGUCCACAUAAGGCUGAAAAUUGAACUUCUCUAGCGGUUUUUCGCCGCCAGCGAAGAUACUUCAUCUUCAUUGGCCUUUGCUUUGUGACGGCUCUAAAUGCCGCCAGCGAAAACCCAAAAUGGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.88%
ME_num:
MEP:
14.23%
HE_num:
HEP:
55.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.68
Avg Expression:
28.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.73792054268563 | 0.046768370887672 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.37547702793536 | 1.30161665567066e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.29215262510895 | 0.000860417009418723 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.51558111216605 | 0.0423644611289403 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.82331146349481 | 0.0147109494720658 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.58897499801648 | 0.00337660457138614 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -11.4685095242342 | 5.08120339173013e-16 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.79893383620506 | 0.0117562677482293 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.70405438505747 | 0.00422471466524294 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.45147898777633 | 0.0315484989789334 |