Chr:
Chr3
Start:
15645752
End:
15647091
Strand:
-
Ref_name:
OSA-LNCN3732
Sequence
(OSA-LNCN3732.1):
GCUGUGACAAAAAUGUAAUAAAAUUCUAGAGUGGAAGUAAGCACUUUCUGUAAUAACACCACAGAAACAAGUAACAAUUCAAAAAAAAAACAAUAUGCUAGAGAUUGACCUAAGAAAGCAACAUGUUUCUGUCAAAAUUUUGUGAGUUCCAUUGAAAACAUUGAUUAUGGACACAAUUUAUUGUUCUUAACCUGAUUAACGGAUGGCAAAGUAACUAUAUAAAAAAUAGUAAGCAGGAAUAACAGCCUAUCUCUAUAAACAGAUUCAAAUUGAUGGUUUCAAGCAAAGCAACAACUCUACUUACUAAUGGAUAGAAACCUAAAGAGAACAUCUGUAAGUUCCCGACACAGUAAAACAUACAACAUUGAAUUAACUGAACAAACUAAUACACAGCACUCUCCUAAAUAAAACAAAAAUAAGAGUGCCAUUAUGCCAAAGCAAUGUAUUAUAUCAAUCAUAGCUUGAUUUCUGUACAUCCACAAACUAACAUUGAAACAGAAUGAAGGAGAAAUAGACCUUACAAUUACAGGUCUAAUAACAGAGGAUUGAGAGCCUCUGGCACAAGUCAUUAAAAAUAUUGGACAAAAACUUAUAACCCAACAAAUAUAGAAAAUGCAGCAUAGCUAUACCAAGUAAACAAUAAACAAUUGUACGGAGUAUCCAUAUUAACGCAAGUUGCAAUGCAACCCAGGGGAGGUACAAACUAACUACUACACAAUGGCAUCAGUAUAACUACUAUGCUUUUUCAAUCAUAACAUUGCGAUAUCAUCGAGCAGUGACGCCAUAUUCAUCCGUUCAUAUCCAGAAAGGGCACGGCAACAAUAAAAUAGCUAGUCUAAAUUCACCCGAGUAAAUAAUUCGUGCCAAUCACAUACAGCCGCCACUCGCCUACAAAAUCCCAAGGGGAAUCCUAAAUACAAGUUUACGAUGCGUAUCCACUAUAUCACCAAUAAACCCUAAUUCCCAAAACGUUGCAGGUAAAUUAGAGCUAAACAACCUAAAAUUCAACGGCAAAUCCCAUCAGCACUCCAAUUACCUAGUCAAAAACUACAGGACUACACAGCCCUGGAAUAUCAGACGAUUAGACCACAACCAAACCAGCAAAUCACACGGGGCUGGCAUUCACCGGGCGAAACGGCGCAAAAACAAGCAGAUCACCCGAGAAAACCCCCCAAAUCGCCAAAUUCCCCCCACCCCCAAGCCCUAACCCACCCAAUCCCCCAAGCCCCCAACCAACCGACCUCAACGGAGAAUCUCAAUACCCCGCCGGGGUCGCAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.85%
ME_num:
MEP:
35.77%
HE_num:
HEP:
48.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.67
Avg Expression:
14.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.25571781820833 | 1.93766070399832e-08 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.87744282982634 | 3.7484046947046e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.11768330535327 | 5.28268646935893e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.50865584599201 | 1.12808143030418e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.67114703567756 | 2.07550206705049e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.48825483959877 | 1.74143898496491e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.45695582361014 | 4.44027723531916e-10 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.05580507946937 | 0.0155625634385391 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.37202018801888 | 5.9881087862939e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.9845462805803 | 9.2361595467849e-15 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.22994395558243 | 1.47888369600502e-08 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.75366803429409 | 1.25785601926235e-07 |
| 13 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.42537653117701 | 2.29308900199428e-24 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.40138157919986 | 0.0188928872763742 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.70037133302778 | 9.95209755266797e-13 |
| 16 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.94360577670736 | 0.0197441388589383 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.63787675506517 | 7.52095947798394e-14 |