Chr:
Chr3
Start:
15106348
End:
15118370
Strand:
+
Ref_name:
OSA-LNCN3724
Sequence
(OSA-LNCN3724.1):
GAGUCCCGGCGCGGCCAGCCGGCGGCCAGGAGGGGCGGCGCCGUCGGCGCCCAACGCAAGCCGGCGCGGCGGGGAAGUGCGGUCCGUGCGGUGGCGGUGCGUGGCCGUGUUGCGUGGCUCGACGCGGUGCGGAGGCCGGGAUGGCACGACGGCGGAUGGCGGCGGGCGGUCGGCGGCGGUUGCUUGGCCAUCCGAUUCGGCUCGCCACCUUUUCUUUUUUUUUUCUUUUCCCUUUUUUUUUUCAUUUUCUUUUCCUCCUCCUGUUUCCUUAUCUCCUUCUUUCGUUCUAUUCCCCUUUCUCUGUGCCCCCGAUGGCGCCUUGCCAUGUGUGGUCGUCGGCCGGCAGCGCGCCUGGCGGUGGCGCAACUGGCGCGGCGAGCCGAGGGGUGCACCCAUGUGGCGGGCCACUACCGGGCUGUGGCGGAGUGGAGGAGGAACUCAAUCGGCCGGGCAGUGGCUGCAGCCUGUAGGUGCGGCAACGGCACGACGUCUGUGUUGUGGCGGCACGUCUGCCGUGCUGGGCGAUGCGUCCUCCAGGUGCGGGCGCGACUGCAGUUGGCACGGCCGGUGUGGCCGUCGGGUGCGCGGUCAUGGUGCGGCCAUGUCGCGGCCAACAGACGGAGCAUGGUGCGGCCGUGGUGUCGCAUGUGCGGGCUAGCGGCCAUGGCGCGGGUUCGCUGCCGUGGCGUGUUGCCGUCACGCCAGUGCCGUGUUUCGUCGAUCGCGGUUUCCACCAAUCGGCAUAAGCCGGCGACUCCAAGUCGGCUGUGGUAGAUUUCGUCGAGAACGGCAACGGCGGAAUAAGAACGAAAAGAGGAAUUGGUUUUCGCGAUUAGAUCGGCGAGAUGCAAAAUGGAUGUGUGAGUUCUUACCCUUCUUCUUCCUCGGUCUUCGGGUCUUCGGUAGAACGUUGUGCUCGGUCUUUGGUAGAACGUCGUGCUGAUAACGUAUUACGCAACCCUUCUGCUACUAUACGAAGUAGUCCAAGAGAGUCCUGUAACUCUGCAAAAGUGGAGACACAAGAUAUGAGGGUGUGACAUCCUUUUAAAUUCAUCCAUUGCAUUCUCAAGUGUAUAAAACCUCUCCUCCAACCAUCUAUUUAUAGGACAAUGCCUUGCCCACUUUUCAUAUUAGUGAUGAGUCCAAUUAAUGGGUAACCGGGCUGGGUCUUCAUGGUCCGACGGUUUCCUAACACCUACCUCUGCUUUUUCAGUUUUCUUUUUUUUUAUCCCCUUCUACGUCCCCUCUCAGAAGUGAAAACAAGAAAAAAAAAAUACUUCCCUCCG
Sequence
(OSA-LNCN3724.2):
ACCAUCUAUUUGUAUUCAAGAUUAGAUUUCAAGGGUUAUAAUAUAAUUCCAUUAUGUGCUAUUGAGUGUGCUAGUUAGGCAUACUUCUUGUGCGUGUACUAGUGAUACUUGCGUGCGACUUUCGUCGCGUUCGGGUAGAACAUUAAAAGUUUUGGCGGUAUUCAAUGCAAAUGCGAUGCAUCGUAUUACCAUACUCUCUCUGGGUCAUCUGCUUGGUGAAUCAUAGUCGAAAAAUACCCAUUCUUGCUUAUAGUUCUUGUUCUAUGAGAGGUAGGGUAUGUACCAUAAUCCUCUAAAUGCUAACGUGCUCAUUCGUUUAGCGUACUUAUUCAUGAGAGUAGCUUGGAGGCACUGGCGAGAGAUUGAAAUGCUAAAUCAAACUCAUCGAGUUAAUGCACAUAGCGCGAUUGGAUUAAUGAUACCGUAGAGCUUCUUGCUCUAUCGUAAUUUCGACAUUGAACAAAUAAUAUGUCAGAAAUAUUCUAGAUUUAGCAAAUUUCUAAUUUGCGAUGCCAGUCAUCUUUCGUUAUUCAAAAAUAUGCACAAAUUAAAUGCCGAUAAAAUGCACAAGUGUUGCAAUAUAAUGGUACACAAAAUUCUCGCAAAUUAUUUCAGUAUAUACUAUGCAAUUCUAUACAUUUUAUCGCAACGAUAUUAAUUAAAAGUAAUGAACGCAUCGCAAAUAAUUAAUAAUGCGAUAAAUUUCAUAAUCACAUAUAUCAGCAAUAAAGGUACCUGAAAAGCAAAUCGGGGUCGAAAUCCAAUGUCCCGUGGUCCCUUUUAUGCGAGAAUAUGAUUUUGGUGAUAUUUGCAAAUUUCAAAUGCCACUCAAACAAAUAUCCCAAUACAGAGGGUUAAUUGUGUAUUUUCUGAAAAAUUCAGGGUUUAAAAAGGAAAAUUUCCUAAGUAGUGGAAUAUGCACUUAAUUUCCAAAAAAUACGAGGGCCUUUUUGCAAAAUUACGGGAAUAUUUCCACUUUUCCUUUUUCUUUCCCUUUUUUUUUUCUUACCUUCCUUUUCCUCUUCCUUUCCUUAUCUUCUUCUCCCGUUGACUGCGUGGUCGAGGAGGCGCAGGCGACCAGGCGACGGCGCGGCCGUGCGCCGGCGGCCAGGGGGUGGCGCGGCCAGGCGGUGGUGCGGCCAGGCAUCGGCGCGGCCGUGCGCCGGCGGCCAGGCGAGGGGGGCGACUCGGCCGGCGGCCAGGAGUCCCGGCGCGGCCAGCCGGCGGCCAGGAGGGGCGGCGCCGUCGGCGCCCAACGCAAGCCGGCGCGGCGGGGAAGUGCGGUCCGUGCGGUGGCGGUGCGUGGCCGUGUUGCGUGGCUCGACGCGGUGCGGAGGCCGGGAUGGCACGACGGCGGAUGGCGGCGGGCGGUCGGCGGCGGUUGCUUGGCCAUCCGAUUCGGCUCGCCACCUUUUCUUUUUUUUUUCUUUUCCCUUUUUUUUUUCAUUUUCUUUUCCUCCUCCUGUUUCCUUAUCUCCUUCUUUCGUUCUAUUCCCCUUUCUCUGUGCCCCCGAUGGCGCCUUGCCAUGUGUGGUCGUCGGCCGGCAGCGCGCCUGGCGGUGGCGCAACUGGCGCGGCGAGCCGAGGGGUGCACCCAUGUGGCGGGCCACUACCGGGCUGUGGCGGAGUGGAGGAGGAACUCAAUCGGCCGGGCAGUGGCUGCAGCCUGUAGGUGCGGCAACGGCACGACGUCUGUGUUGUGGCGGCACGUCUGCCGUGCUGGGCGAUGCGUCCUCCAGGUGCGGGCGCGACUGCAGUUGGCACGGCCGGUGUGGCCGUCGGGUGCGCGGUCAUGGUGCGGCCAUGUCGCGGCCAACAGACGGAGCAUGUACGGCCAUUUCUUCUUUUGCUUCUUUCCUUCAUCUUCAGUCCUCUCUGGCCAGUACAUCCAUGGCACGUCGGCACGCCGCCUUGCAGGGUGCGGCCGUGGUGUCGCAUGUGCGGGCUAGCGGCCAUGGCGCGGGUUCGCUGCCGUGGCGUGUUGCCGUCACGCCAGUGCCGUGUUUCGUCGAUCGCGGUUUCCACCAAUCGGCAUAAGCCGGCGACUCCAAGUCGGCUGUGGUAGAUUUCGUCGAGAACGGCAACGGCGGAAUAAGAACGAAAAGAGGAAUUGGUUUUCGCGAUUAGAUCGGCGAGAUGCAAAAUGGAUGUGUGAGUUCUUACCCUUCUUCUUCCUCGGUCUUCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
40.04%
HE_num:
HEP:
57.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.57
Avg Expression:
14.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.32905902320577 | 0.0324772114710187 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.13283629100615 | 0.0385208393433023 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.26551292043664 | 0.0269908257631884 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.28555053129182 | 0.00746556718099044 |