OSA-LNCN3724


Function Link


Basic Info

Chr:

Chr3

Start:

15106348

End:

15118370

Strand:

+

Ref_name:

OSA-LNCN3724

Sequence
(OSA-LNCN3724.1):

GAGUCCCGGCGCGGCCAGCCGGCGGCCAGGAGGGGCGGCGCCGUCGGCGCCCAACGCAAGCCGGCGCGGCGGGGAAGUGCGGUCCGUGCGGUGGCGGUGCGUGGCCGUGUUGCGUGGCUCGACGCGGUGCGGAGGCCGGGAUGGCACGACGGCGGAUGGCGGCGGGCGGUCGGCGGCGGUUGCUUGGCCAUCCGAUUCGGCUCGCCACCUUUUCUUUUUUUUUUCUUUUCCCUUUUUUUUUUCAUUUUCUUUUCCUCCUCCUGUUUCCUUAUCUCCUUCUUUCGUUCUAUUCCCCUUUCUCUGUGCCCCCGAUGGCGCCUUGCCAUGUGUGGUCGUCGGCCGGCAGCGCGCCUGGCGGUGGCGCAACUGGCGCGGCGAGCCGAGGGGUGCACCCAUGUGGCGGGCCACUACCGGGCUGUGGCGGAGUGGAGGAGGAACUCAAUCGGCCGGGCAGUGGCUGCAGCCUGUAGGUGCGGCAACGGCACGACGUCUGUGUUGUGGCGGCACGUCUGCCGUGCUGGGCGAUGCGUCCUCCAGGUGCGGGCGCGACUGCAGUUGGCACGGCCGGUGUGGCCGUCGGGUGCGCGGUCAUGGUGCGGCCAUGUCGCGGCCAACAGACGGAGCAUGGUGCGGCCGUGGUGUCGCAUGUGCGGGCUAGCGGCCAUGGCGCGGGUUCGCUGCCGUGGCGUGUUGCCGUCACGCCAGUGCCGUGUUUCGUCGAUCGCGGUUUCCACCAAUCGGCAUAAGCCGGCGACUCCAAGUCGGCUGUGGUAGAUUUCGUCGAGAACGGCAACGGCGGAAUAAGAACGAAAAGAGGAAUUGGUUUUCGCGAUUAGAUCGGCGAGAUGCAAAAUGGAUGUGUGAGUUCUUACCCUUCUUCUUCCUCGGUCUUCGGGUCUUCGGUAGAACGUUGUGCUCGGUCUUUGGUAGAACGUCGUGCUGAUAACGUAUUACGCAACCCUUCUGCUACUAUACGAAGUAGUCCAAGAGAGUCCUGUAACUCUGCAAAAGUGGAGACACAAGAUAUGAGGGUGUGACAUCCUUUUAAAUUCAUCCAUUGCAUUCUCAAGUGUAUAAAACCUCUCCUCCAACCAUCUAUUUAUAGGACAAUGCCUUGCCCACUUUUCAUAUUAGUGAUGAGUCCAAUUAAUGGGUAACCGGGCUGGGUCUUCAUGGUCCGACGGUUUCCUAACACCUACCUCUGCUUUUUCAGUUUUCUUUUUUUUUAUCCCCUUCUACGUCCCCUCUCAGAAGUGAAAACAAGAAAAAAAAAAUACUUCCCUCCG

Sequence
(OSA-LNCN3724.2):

ACCAUCUAUUUGUAUUCAAGAUUAGAUUUCAAGGGUUAUAAUAUAAUUCCAUUAUGUGCUAUUGAGUGUGCUAGUUAGGCAUACUUCUUGUGCGUGUACUAGUGAUACUUGCGUGCGACUUUCGUCGCGUUCGGGUAGAACAUUAAAAGUUUUGGCGGUAUUCAAUGCAAAUGCGAUGCAUCGUAUUACCAUACUCUCUCUGGGUCAUCUGCUUGGUGAAUCAUAGUCGAAAAAUACCCAUUCUUGCUUAUAGUUCUUGUUCUAUGAGAGGUAGGGUAUGUACCAUAAUCCUCUAAAUGCUAACGUGCUCAUUCGUUUAGCGUACUUAUUCAUGAGAGUAGCUUGGAGGCACUGGCGAGAGAUUGAAAUGCUAAAUCAAACUCAUCGAGUUAAUGCACAUAGCGCGAUUGGAUUAAUGAUACCGUAGAGCUUCUUGCUCUAUCGUAAUUUCGACAUUGAACAAAUAAUAUGUCAGAAAUAUUCUAGAUUUAGCAAAUUUCUAAUUUGCGAUGCCAGUCAUCUUUCGUUAUUCAAAAAUAUGCACAAAUUAAAUGCCGAUAAAAUGCACAAGUGUUGCAAUAUAAUGGUACACAAAAUUCUCGCAAAUUAUUUCAGUAUAUACUAUGCAAUUCUAUACAUUUUAUCGCAACGAUAUUAAUUAAAAGUAAUGAACGCAUCGCAAAUAAUUAAUAAUGCGAUAAAUUUCAUAAUCACAUAUAUCAGCAAUAAAGGUACCUGAAAAGCAAAUCGGGGUCGAAAUCCAAUGUCCCGUGGUCCCUUUUAUGCGAGAAUAUGAUUUUGGUGAUAUUUGCAAAUUUCAAAUGCCACUCAAACAAAUAUCCCAAUACAGAGGGUUAAUUGUGUAUUUUCUGAAAAAUUCAGGGUUUAAAAAGGAAAAUUUCCUAAGUAGUGGAAUAUGCACUUAAUUUCCAAAAAAUACGAGGGCCUUUUUGCAAAAUUACGGGAAUAUUUCCACUUUUCCUUUUUCUUUCCCUUUUUUUUUUCUUACCUUCCUUUUCCUCUUCCUUUCCUUAUCUUCUUCUCCCGUUGACUGCGUGGUCGAGGAGGCGCAGGCGACCAGGCGACGGCGCGGCCGUGCGCCGGCGGCCAGGGGGUGGCGCGGCCAGGCGGUGGUGCGGCCAGGCAUCGGCGCGGCCGUGCGCCGGCGGCCAGGCGAGGGGGGCGACUCGGCCGGCGGCCAGGAGUCCCGGCGCGGCCAGCCGGCGGCCAGGAGGGGCGGCGCCGUCGGCGCCCAACGCAAGCCGGCGCGGCGGGGAAGUGCGGUCCGUGCGGUGGCGGUGCGUGGCCGUGUUGCGUGGCUCGACGCGGUGCGGAGGCCGGGAUGGCACGACGGCGGAUGGCGGCGGGCGGUCGGCGGCGGUUGCUUGGCCAUCCGAUUCGGCUCGCCACCUUUUCUUUUUUUUUUCUUUUCCCUUUUUUUUUUCAUUUUCUUUUCCUCCUCCUGUUUCCUUAUCUCCUUCUUUCGUUCUAUUCCCCUUUCUCUGUGCCCCCGAUGGCGCCUUGCCAUGUGUGGUCGUCGGCCGGCAGCGCGCCUGGCGGUGGCGCAACUGGCGCGGCGAGCCGAGGGGUGCACCCAUGUGGCGGGCCACUACCGGGCUGUGGCGGAGUGGAGGAGGAACUCAAUCGGCCGGGCAGUGGCUGCAGCCUGUAGGUGCGGCAACGGCACGACGUCUGUGUUGUGGCGGCACGUCUGCCGUGCUGGGCGAUGCGUCCUCCAGGUGCGGGCGCGACUGCAGUUGGCACGGCCGGUGUGGCCGUCGGGUGCGCGGUCAUGGUGCGGCCAUGUCGCGGCCAACAGACGGAGCAUGUACGGCCAUUUCUUCUUUUGCUUCUUUCCUUCAUCUUCAGUCCUCUCUGGCCAGUACAUCCAUGGCACGUCGGCACGCCGCCUUGCAGGGUGCGGCCGUGGUGUCGCAUGUGCGGGCUAGCGGCCAUGGCGCGGGUUCGCUGCCGUGGCGUGUUGCCGUCACGCCAGUGCCGUGUUUCGUCGAUCGCGGUUUCCACCAAUCGGCAUAAGCCGGCGACUCCAAGUCGGCUGUGGUAGAUUUCGUCGAGAACGGCAACGGCGGAAUAAGAACGAAAAGAGGAAUUGGUUUUCGCGAUUAGAUCGGCGAGAUGCAAAAUGGAUGUGUGAGUUCUUACCCUUCUUCUUCCUCGGUCUUCGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

9

LEP:

1.83%

ME_num:

197

MEP:

40.04%

HE_num:

285

HEP:

57.93%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.57

Avg Expression:

14.52

Tip: OSA-LNCN3724 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.329059023205770.0324772114710187
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.132836291006150.0385208393433023
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.265512920436640.0269908257631884
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.285550531291820.00746556718099044