Chr:
Chr3
Start:
14835746
End:
14838045
Strand:
+
Ref_name:
OSA-LNCN3716
Sequence
(OSA-LNCN3716.1):
AUCACGCCGUCGGCAUGCUGCUGUGUUGUCCUCCUGUUCAAGCCAUGUCGCGCCCAUGUAGCUGAAGAAUGGUAGAAAUGUUGGGCAUCAUUAUCAUUGUCCAAAUGGAACACCAAAUUAAGAUAAUACAGUAAGAUAUAUGAAUUAAUUUAUAGGAUUUGACUAGCUCUAAACAGGAGUAUAUGUCAUUGACACUGACACAUAAUCUUUUGUACUGUUCUUGGAGAGGUAGCUGUACUGACAGUACUGUAAAGAUAUUGCCAUAUUGUUCUAAGGGGAAUUGACUUUAUAGAGAUUUUCUUCGACGACAAUAAUAUCAUCAUCUAAUUGUUCCUUUCUGCCUAAUUGCUUGGUCUCCUCUUUCCCACGUUGUUAACUUGCCAUGGCUCAUGACAAUCACAACAACACUAAAAAAGAUUGAUUUCCCCGCAAAAAGAAAAAAAAAUCUUUUUUGUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.82%
ME_num:
MEP:
57.72%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.68
Avg Expression:
2.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.21813769012504 | 0.0136685320168294 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.79444881780765 | 0.0342705872077915 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.43018619588104 | 0.0192254936850021 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.4730835375837 | 0.000364525908199482 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.77382195177642 | 3.39473211869987e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.04118279678407 | 0.0286149808171669 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.09820083203265 | 0.0144024149921471 |