Chr:
Chr3
Start:
13497681
End:
13505364
Strand:
-
Ref_name:
OSA-LNCN3692
Sequence
(OSA-LNCN3692.1):
CAAAAGUCUAUUUUGCCUCCCUGCUACAGUGUCAUCUUCAAUCUCCAGCCGGCUGGAGACAGAGCCCGAGCCAGCCGCACAGUACCUGUAUAGCCGCGGUUUUCCCCUCCAAAUCCGGCCUUUUAUCUCGUGUAUUUCCAAAAUUAGUUGAGGGGAAAUACUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAGAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCGAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCACCUCGUCGCCCUCUUUCGUUUGCCCCCUUCCCCGUGGUCUCCCGUGCAUCGUAGCUCGCCGUCGACGCCGCUUAGUCCGCCGCCGCCGCCGGCCGGGUUGCAGCCGCGCCGCCCCUGCCGUCGCCGCCGCUUGCCGCCGCCGCCAAGAGGUGCGCCGAGGAGUGAGGAAGCCCGGCCGCCCGUCCUUCUUCGCCGCCGGUCGCCGUAGCUCGCCGCCGACGGUCAACCCGAACCGCCGCCCGUUCCCCGUCGUUGCCGGCCGUCGUCGGACGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGUUUCGUGAGUGCGCCGGAAGUAUUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGAAGAGGAGCUCCUUGGAGAUGAAGGCUUUGGUGUCUAGCUCGUGCCUGCCGUCAAGCGCCUGUGGUCGUCGCCCUAGUCUUCCGUUGUUUC
Sequence
(OSA-LNCN3692.2):
CAAAAGUCUAUUUUGCCUCCCUGCUACAGUGUCAUCUUCAAUCUCCAGCCGGCUGGAGACAGAGCCCGAGCCAGCCGCACAGUACCUGUAUAGCCGCGGUUUUCCCCUCCAAAUCCGGCCUUUUAUCUCGUGUAUUUCCAAAAUUAGUUGAGGGGAAAUACUCCUCUUAUCCUCCUCUAUCUUUACCCCCAAGAAUCGGAGCAAACCGUUGAGUAUUUUAUCCGAAUCGAACUCGUUUUUGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUCCCGGAUCGAUUUCUUGCGGGAGGAGUCCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCACCUCGUCGCCCUCUUUCGUUUGCCCCCUUCCCCGUGGUCUCCCGUGCAUCGUAGCUCGCCGUCGACGCCGCUUAGUCCGCCGCCGCCGCCGGCCGGGUUGCAGCCGCGCCGCCCCUGCCGUCGCCGCCGCUUGCCGCCGCCGCCAAGAGGUGCGCCGAGGAGUGAGGAAGCCCGGCCGCCCGUCCUUCUUCGCCGCCGGUCGCCGUAGCUCGCCGCCGACGGUCAACCCGAACCGCCGCCCGUUCCCCGUCGUUGCCGGCCGUCGUCGGACGUCGUUUGUCGUUGUGCUUGUCGUUUCCGUCGUUGCGAAGUUUCGUGAGUGCGCCGGAAGUAUUCAAGAAGAUUAAUUGAAGACCGAUUAUUGCAAGUUGAAGAUAAAGGAUCCAGAAGGAGAAGACGUUUGGCUUAUACCCCAGUUGAGCUGCCUGUGGGAGUGGAGCUGAAGCCAUCGCUAGACCGUUAAUUCCGCUGCUGUUUCUUUUUCUUUUCUUUUACGCUGCAGCUUCGGAAGAUCCGCUCUUCGUGGAAGUUGAAGCCGACGUUUGGGAAAGCGAGCAAGAAGAGGAGCUCCUUGGAGAUGAAGGCUUUGGUGUCUAGCUCGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.27%
ME_num:
MEP:
44.51%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
2.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.77078746515428 | 0.036800675353071 |
2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.35971578671035 | 0.000369286341510641 |