Chr:
Chr3
Start:
13164951
End:
13165610
Strand:
+
Ref_name:
OSA-LNCN3682
Sequence
(OSA-LNCN3682.1):
GCCGAUCCAGCUUAUCAUGCUUCCACGGUUCGUCCUUCAUCCAGCACCUGCAGCUAUGCCUGGACAGUGAUGGAAAACAACUGCGCAACUGCAGCUUAAGAGGUAUUUUUGCGAGUUCCAUUGGCAACUCGUCAGCCUAUAAACCAAGGCUAAAUUUGAAUUUUUGAAACUUAAUUUCAGAUUGGUCUACGUGGUUUUCUUAUUGUUUUCUAUUUAAACCGCUAAGAGUAGAAACAUAAAAUCCCUACUCUAAAAUUAUUUUUCUUUGCUUCGUGUCACGUUUCAUGGCACAUAAACCGUACCCAAGCAAGUAUGCAACUGUAGUUUACAGAACAGGCUGAAUCAGUAGUGAUUACGGAGCUAAGGGUAAAACACAGAGGGCAGCUAUCAUCUGGUGCAAAUUGCAUACAUGUGUUGCCAUCUAUUCUCUUCUGAUGUGACAUCCCAACAGAAAAGCUCGAUUUGCAUAUGGGCAGACCGAUGAAUUCAGAUAUGCCUAACAGCCAGCUCAGAUUUUGGAUCAACUACUGCUCUACUAGUACUCCUAAUCUGACUAUCUAGUGUCUGAAGUUUGGAAGGUUCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.28%
ME_num:
MEP:
66.87%
HE_num:
HEP:
27.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.75
Avg Expression:
11.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.1028294941527 | 0.000972829905099085 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.10687107234494 | 6.55736741937981e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.97982860825414 | 3.86324212343194e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.7408830831883 | 1.30637808524588e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.39061633345002 | 3.26247213159966e-05 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.5447412704936 | 0.0478447334979405 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.16088658240534 | 0.00738327745716373 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | 1.51708964296786 | 1.20273886323906e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.41563213920808 | 9.96201148442382e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.20472116831099 | 9.38965034810125e-05 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.53203099035843 | 0.000439013434738375 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.46166119292829 | 0.00686216709373286 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.40063396574117 | 0.000254771721607509 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.10984407276131 | 6.58988208350122e-05 |