OSA-LNCN3679


Function Link


Basic Info

Chr:

Chr3

Start:

13149824

End:

13150977

Strand:

.

Ref_name:

OSA-LNCN3679

Sequence
(OSA-LNCN3679.1):

CUCACAUCACAAGUGGUGCAUAGCGUGCGGCCAAAAAAAAAAGUGUGAAAUGCCAUAGAAAAAUUCACACGGGAGAUGGAUAGCAAAAUCGUUGUUUAAUAAUAUCAUCUUGACGGAUACGGGGUUUAUUGUUGUACAUGGGGUAAGUGUUUCAAUGACUUUAAAUCGUUUGUUGCAUAUGUUGAUCUAAUUUUUUUCAUCUAGCGAUCUGACCGUGCUUCUCUUUUUUUUUAACAAUUGAAACAUUCUUUCGCAAUUGAUGAAAUAAUGCUUUUUAUAGGGUGAAGCAACGUCCGAUUUAAAAAAUCGGGCGCCCGAUUUAUAGGGGUUCGUUUAAAUUUUUUUUGCACACGGAUCACGCGCCACCAAACCCCGGGACUCGACGCCGACGCGCCCACCACCCGAAGCCAAUUUGAUCCCACGUCACGGGGGGCGCCUCUGCGUCGCCGUCGGAGAAAAAGCUACAGUAGCUGGACAACCGGGAUCCAUGGUGCUACGGGCCUUCCGCUGGCAAGAAAGAUCCUGUCGUCCGAGGCGUUCCGGCUGAUGUCUCGUCCGCCGGCGACGACGAGGCGGUGGGGAACACGGACGUGCUGCUGUUCGAGCUGGUCGACGGACGGGACACCUCAUGCUUCUGGAGCUGCACCAGACGCGCCGUCGCCGGAGACGACGACGACGACGACGACGCUCGUCAUCAGGGGUGUGGGCGGCCGCUCGAGGACAAGGAUGCAUGCGGUGGGCGCCGUGGCCGCCGUGUGGGAGGACGUCGAUCGACGACCGCCGCGCCGCGGCGCUCACCACCCAUCGUCGCAUUGAUAUCAACGGGGGUGCUGGACACGACGACGGAGGCGGCGGCGGCGAGGAGGGCGCGCGGCGGCGCAUCUUCGCGUCCGACGCGUCGCGAUUCGCGUUCAGGGAGAACAUCGCGGCGCACGCAUGGCUUCUUCUCGACGCAUAUCCGAUCCGUUCCAUAUGAUGUACGUACUAGAUCGACGGUGCAUACGAGGCCACGUACACACAAACAAACUACGGGGAGAUGGAUUAUAUUAGUUUGAGAUUUGUGGCAUCAGUUUUUUUUGUGUUUUUUUAAUUAUAUGAUGAGGAUUUUUUUUAGAUAAUGGAAUUAUAUGAUGAGGAUAAUUUGUUGAAUGGAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

315

LEP:

64.02%

ME_num:

173

MEP:

35.16%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.91

Avg Expression:

2.06

Tip: OSA-LNCN3679 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.223228581245590.029948480792481
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.691324799803340.00136623332699081