Chr:
Chr3
Start:
13149824
End:
13150977
Strand:
.
Ref_name:
OSA-LNCN3679
Sequence
(OSA-LNCN3679.1):
CUCACAUCACAAGUGGUGCAUAGCGUGCGGCCAAAAAAAAAAGUGUGAAAUGCCAUAGAAAAAUUCACACGGGAGAUGGAUAGCAAAAUCGUUGUUUAAUAAUAUCAUCUUGACGGAUACGGGGUUUAUUGUUGUACAUGGGGUAAGUGUUUCAAUGACUUUAAAUCGUUUGUUGCAUAUGUUGAUCUAAUUUUUUUCAUCUAGCGAUCUGACCGUGCUUCUCUUUUUUUUUAACAAUUGAAACAUUCUUUCGCAAUUGAUGAAAUAAUGCUUUUUAUAGGGUGAAGCAACGUCCGAUUUAAAAAAUCGGGCGCCCGAUUUAUAGGGGUUCGUUUAAAUUUUUUUUGCACACGGAUCACGCGCCACCAAACCCCGGGACUCGACGCCGACGCGCCCACCACCCGAAGCCAAUUUGAUCCCACGUCACGGGGGGCGCCUCUGCGUCGCCGUCGGAGAAAAAGCUACAGUAGCUGGACAACCGGGAUCCAUGGUGCUACGGGCCUUCCGCUGGCAAGAAAGAUCCUGUCGUCCGAGGCGUUCCGGCUGAUGUCUCGUCCGCCGGCGACGACGAGGCGGUGGGGAACACGGACGUGCUGCUGUUCGAGCUGGUCGACGGACGGGACACCUCAUGCUUCUGGAGCUGCACCAGACGCGCCGUCGCCGGAGACGACGACGACGACGACGACGCUCGUCAUCAGGGGUGUGGGCGGCCGCUCGAGGACAAGGAUGCAUGCGGUGGGCGCCGUGGCCGCCGUGUGGGAGGACGUCGAUCGACGACCGCCGCGCCGCGGCGCUCACCACCCAUCGUCGCAUUGAUAUCAACGGGGGUGCUGGACACGACGACGGAGGCGGCGGCGGCGAGGAGGGCGCGCGGCGGCGCAUCUUCGCGUCCGACGCGUCGCGAUUCGCGUUCAGGGAGAACAUCGCGGCGCACGCAUGGCUUCUUCUCGACGCAUAUCCGAUCCGUUCCAUAUGAUGUACGUACUAGAUCGACGGUGCAUACGAGGCCACGUACACACAAACAAACUACGGGGAGAUGGAUUAUAUUAGUUUGAGAUUUGUGGCAUCAGUUUUUUUUGUGUUUUUUUAAUUAUAUGAUGAGGAUUUUUUUUAGAUAAUGGAAUUAUAUGAUGAGGAUAAUUUGUUGAAUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.02%
ME_num:
MEP:
35.16%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
2.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.22322858124559 | 0.029948480792481 |
2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.69132479980334 | 0.00136623332699081 |