Chr:
Chr3
Start:
13052587
End:
13053646
Strand:
+
Ref_name:
OSA-LNCN3678
Sequence
(OSA-LNCN3678.1):
GUACAACUCACUUAUACAUUUGGGCUACUCUCUAGUAGAGUUAUAAUAUAGGAAAAGAGAGGAGGGAAGCUUUGAAAGGAGUGCCCCUAAUAUCGGAAUUCUCUCCGGUGAAGUUCCGGAGACGUGCAGGAGAUAUUGACAUUCUUCCAUGGGAGUUCCGGAGGAAUGCCGGAGAUGUCAGCACUUUCUCUGAUUUUGUACCUUGACGGAUGUCUCUUUUAUAUAAAUAUUUUCAAGGACAUGGUAUGUCAGAGAAGUAGGACCGGAGGUUCCCACUCCAUCAGCAACAUGGGGAACUGUGGAGCCCACAAUGGUCAAAGCGAGAACUAAAACAGGGACCCAAGUAGUGCCCCUGGCCGAAGAAGGUGACCCGAGGACAACUGCUUCUCGGGGCCGAGCUAGCGUCAACUUAGGGCCACCACGGUCACUGCACGUGGGCCAGGGCCCCGAGGUCUGUUACGAGCGAGUUUGUCUUUGGGUAGAUGUGACUCAGUCCUGCCGGCUGCCUGACCCCGUCAUUCAGCAUUAAUUACGGUAUCAUGUGCACAACCUUGCCCCGUUAUUCCACAUUAAUUACCAUGUGAUAUGGUUCCUGGGGAGAGAUCACGGGCGGCGUGGGAGAUGUGGCGGUGCAUGUCUCUCCUCGUUGCCCAUGUCGCCCCGGAGAAAAAGUAAGUGACCCAGCGUGUGCUCCAUGCUCACCUGGCUAUAAGGGCCCACUUUUCUCCUCCUCUGUGGUUGAUAUACAGGCCCAAUGACUGCUGGGGUGAUGGCUUGGGUGACUCUGCUCCACGCAUCAACCAGUAGGUAGACCCUUUGCAUCCAGCCGGUCCUCUUAGAGGGACAAUGAGAAGACUAAGCAUACCAACUUCCUGUGGGCUGGGUCCCACAUAUGUAUACUUGCAUGGGCACUGUAGUAUCCCCUUGGCAUGUAAAAGGAGGACCAAUUCCACAGAGAAAAGGGUUCAAUUCAGAAAUUUGGUUUAGUUGGUCUAAGUUAGAUUCUAGACACAAGAAAGUGAAGAAGGGUUCAUCAUCUCCCACUUAGAACAACAUCCACCCAAUAACACAUUGUAAUAUUGAUCGCAUAUAGCAAGAACACAAUAGUAGGGUAUUGUGCUUUCAAACAUCAUGAACCUGUAUAUAUCUUUUAUCUACAUCCUUUCAUGCGAUCCAAACACAACCUCGGUACCUGCACCCUGGCCGAACUUCCAAAGGGGGUCAGGGUACUUUGCCUUCCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.56%
ME_num:
MEP:
22.76%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.85
Avg Expression:
6.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.72695082305325 | 0.00743334569417991 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 4.97288985407343 | 0.0414553083921883 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 2.28905654260893 | 1.07889275604631e-06 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.28000713994734 | 0.0402854754955783 |