Chr:
Chr3
Start:
13050846
End:
13051433
Strand:
.
Ref_name:
OSA-LNCN3676
Sequence
(OSA-LNCN3676.1):
GCUAUGGAAGGUUGAGGCCUAUAUGUACUGAUCUCCGCAUAUCAAUAUGAUUAUCGUGUUGAUUCAUAUUCACUCUCAUGGUAUCAGACUACUGAUCACUCGCUUCCGCUCUCUAACCUCCCCUCCCCGCCGGCGAACAUCACCGGCCAUUCUUCCUUCUCCGGCGACAUGUCGUCCGCCUCCUCCACCCCACCGACAACUUGGAGAAGAUAACAUAUGAUCAUGAUAUCAUGCGGGAUGCUUAGCCUAAAGAACAGUGCACGUGGUUGGUGAGAAUUCCAUAUGGCAUACGAUAGAUAUAUUGUGUGCAUACUGGAUACGUAGUCGAAUUUGGAGAGAGUCCAAAUUUGGUACGAUUUGAGUUUGUAAAGUUUGUUUCUUGUAUGGGAAGGUUUCCUAGGGGAUUAUGACUUCGUGUACAAGAUUGGUUUGUGGCUUUAGGCUACUUAUCAUGGAUAUAAAUAGAGAGGGAGGGUAUGUCCUCCCAGUAUCAAUUUAGAUAGAGUUGAGUUUAGAGAAAAGUUAGGGUUUCGAGUUUGGUCAAGAUUUUUGUAAAUGCUAUUGUUGCACUUUAUAGAUACAGAGAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.2%
ME_num:
MEP:
11.59%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.82526399581284 | 0.0270546361628001 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.63064751618974 | 0.000296135870477513 |
| 3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.24394762489539 | 0.0401632284431083 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.73122045109833 | 0.0428227528096868 |