Chr:
Chr3
Start:
11769660
End:
11775897
Strand:
-
Ref_name:
OSA-LNCN3656
Sequence
(OSA-LNCN3656.1):
CCUUAACUGAGAAUACAUGCGCAACACGACUACGGUUACCGCAGCAUCCUAAUGCGGCAAUUACGCCAUUACCAAAAAUAAAGAGGCAGUACUGGUUUGUUUCCCUUCAGAAAACAUUCUAAGAUCUAGAAAGCCAGGAGACCAGGAGAUUAUCGCGCGAGUAAAAUUAGGUUUGCCUAUUGAAGCAAGGGCCAGAGCCUAAUUUUGCAUGUGUUUGGUGAAACAGAGAGAUCUUUAUCUGAUCAGACAUAUCUCCUGCAAUCCUCUCACAGAGUUAAGAGCACGCAAUUAACAGUCAUAUAGGACAUGGUUAUCUUUUGUUGUGACAUAAUCAUACUACACAGCAUAAAGGUAUCAUGAUUCAGACAUGAUCAUAAAUAAAGUACUAACGGAAGAAUUAGUCAAAGCCGAAGCAUGAAAACAUUUUGUGAUGCACGGGAUUAGCUGAAACGGUAUUUUCAUGCUGCUUUGAAACAAGUAGGGAUCAAAAGAAACUUAAACAUGUGAAAUUUCUCCUUUUCUUAUCCUUUCCGUGAAGUAUUUUGAAACACAUGAAACAACAAGCCUUGAUCAGAUCAAAGUGGGAGAUGAAAAAGGAAUAGAAAAGCACGGGAAAAACAUUUCAGAAAAAGGAUAUAUUUUUAUGGAUUAUUUUUUCGGUCUACCACGACCGGCAUGGACUGUUGGAAACAAGAACAUGUACCCAUGUGCUUAUCAAAAGGAAUCGGAGGCCAUCUAAAAGAACAGAAGAAAACAAGAGACGAAAAUGGAUCAAGAACACAUCAAAUGGAGAACAGAGGAAAACAUACACCGCCUUAGAGGAAGCAUCAAUGAUUGUUUUUGGCCAUAAACUCGAUGCAAAACAAGAUGCUUCCUUACACCCAACCACUUAACAUUUCCAGAGCAGGAUUUACAACAUGUAUUCCUUAAAUUAGGUUAAUCUCUGAGAUCUAAUGAACACAACAAGAGAAAACUAGUAGAAAAUUUCUAAGUUUUUUUCCCUUUCUCCUUUGGCUGGCAGCAAAUCGUAUAAUCUGAAAAAAGCUAAGCUUUGACCUCUGCCAUGGAUUUACUCAAGCUUGGCAGAAACAAUUCUACGCACAAGAACAGAAAAUCACGGAAUAAAAUUGGAAGGGAAUAAAGGGCAACGAAGAAGUAGCCAAACAGGAAUUGGCUACCGCAGGCAGCUCUAGCAUCCACGAAAUAUCUGAAAAAGAGGACAAAAGAUCUACCCAAACAGAUCACAGACCACCAACCUAUCAUGAACACAACCACAUCCUCUCCAAGAAAAAAAAAGAAAAAAAAAGAAAAAAACUCGAACACAAGCAACCAUCAACAGGAGGACAUGGAGAACAGCAAGCCCACAACAGAAAGAGAAGGGGAUAGCAGCAAGCAAGCAAAGGCGAGAUCGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.96%
ME_num:
MEP:
57.11%
HE_num:
HEP:
32.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.81
Avg Expression:
14.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.52274306531119 | 8.81877308528322e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.96155038052173 | 9.18078559032091e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.73565574122037 | 6.37215811425549e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.30801225847487 | 0.000137460528509301 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.04291321400324 | 4.19723629886847e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.60076492676482 | 0.0267121334508776 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.89749811409798 | 1.6439660991516e-09 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.26181353985545 | 0.000228271726816014 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.5257445820342 | 0.0455419603221539 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.27195766279537 | 0.0142408856237016 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.10085215477601 | 0.000100337165857994 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.89328696236196 | 1.9849893236302e-05 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.51448938424613 | 0.00114589135995619 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.12018490252227 | 0.00365300823212348 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.29863658378112 | 5.82267529080595e-11 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.83277047451633 | 2.75774246627496e-07 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.81304232521482 | 2.32782171288511e-08 |