Chr:
Chr3
Start:
11735686
End:
11736535
Strand:
+
Ref_name:
OSA-LNCN3652
Sequence
(OSA-LNCN3652.1):
CGGUUCUUCACCGGUCAGGGCUGGAAGAAGGCGGUGGCUGUAGGUGUGGGUGUCCGUGUGCUCUAGGAAAUGGGUUCCCGUGUAGCUCACCCUCUCUAUCGACGGUCCCCGCAAUGAAGGCGGAUGGAUUUGGGAUAGUCGACACGAUUUGCACGGUGACGAGAGGCGCUGGAUCCAGCACAAUCGGCUCCUGCUCGUUGAUCGGCCUAGCGGACGAAGCUAGAGGUGGCGGAUCUGGGUGGUCGGGCCAUUCUCCAUGGUGACGACGGCUGGAGGUGGCAAACCGAGUGCGCCUAGCUCCUGCUUGUUGGUCUCGAUAGGCGAAGUUGGUGCAGCUUGCUUUAUUCUCUAGCCUCGGGUACUCGUGGUUAUGGAUGCCAAGCAAGGUGGCCCCAACAAGUUCAUCGAUUUUUGUGGUAAAUCUUCGACGGCCUUCUUGCUUGAUGGCUGACACAAUGUAUGGGUUUCAUGGGGCGUCGCUUGUGAGGCACAGUUGCUCUUCGUGGUAGUGGUCAUCUGGUGAUUUGUUGUCACUGGGUUAGAAUGGAAUGCGUGGUGGUGAGGCUUGAUCGAAUCGCUGCUACCGUGUUUUGUUUCCACCUAAUCGUUCCAAGGCAGAAGUUCAGUCGACGCCAUCCUAAUCCUUUUGUAUUUAAGGUGGGCUGGGGUUUGGCACUAUCUUCCAAUUUCUCUUGCAAUAGUAUCCAAUUUGAGAACUAUGUUUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.86%
ME_num:
MEP:
19.72%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
1.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.50522008435219 | 3.00979905850861e-05 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.33205865709063 | 1.16666446484608e-06 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.54012730864162 | 0.0222370481671642 |
4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.29230769353846 | 0.0195258625139807 |