RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN3642

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

11434661

End:

11435805

Strand:

.

Ref_name:

OSA-LNCN3642

Sequence
(OSA-LNCN3642.1):

CUUCUGUCUUAGCCGAUAUAUCUCUACAAUCACAAUGCUAUUGUAAAUAGAUUUGUUAUAUCCAUCACAUUAGACAGAUCUAUCGGCUUAUCGAGUAUUAGAUUAAAGGCAAUCGACUGAUGAUGAUGUAAUAAAAUAACAAUAUAAUCUAGUAUAAACCAAUCGGCUAGCAAUACAAUAUGAUAGAAUAAGCAUUGAUCCGAAGGUUAAGGCAUACAUCGGCUGGAGGUCCGAUGUCAUAAAAUCCACAGUAAAGUCUUUGUUGCGAUCGGCUAAAUCCGACUUAUAUGUAUAUGCAAUCCUUAUAAGCCGAUGCAACAUCAAGAUAUCUUAUCAGUUAGCACCCCGAUAAAACAUUAGCAUGAACCUAUCGGCUUAACAAGAUUUAUAUUAUCAAGGCCAGAUCCGGCGGCUGGCGGUCGGAAGGCGGCUGGGGAAGGCGACGCCGGCCGGCGGUCGGGAGGCGGAGGAGGAAGUGGCCAGCUGUGGGGGUAGAGCCCGCGGUGGUCAGAUCUGCGCCCCGUAGGCCAGAUCCGGCAGCCGGCGGUCGGAAGGUGGCCAGGGGAGGCGGCGGCGGCCAGCGGCCGGGACGCGGAGGAGGAAGUGGCCGGCGGUGGGGGAGAGGCUGCGGUGGCCGGAUCCGCGCCCUAUAGGCCAGAUCCGGCGGCCAUCGGUCGGAAGGCGGCCGGGGGAGGCGGCGCGGGCCGGAGGUCGGGAGGCGGAGGAGGAUGCGGCCGGCGGUGGCCUGAUCCGCGCGUGGAGUCGGAGGCCUUCGCCGGACCCAUUGCUCGGCGGCUCGGAGUGUGCAAGCUCGGUGCGUGCGGAGAAAAAGAAAAACGAGAGAGAGAGAGGGGGGAUGGAUAAGGAAGAAAGAAAAAAUGAGAGAUGAGUGGUUAGUGGGUGAUAGAUUAGGGUUGGGUUGGGUGGUUUCCACCUGUGAGGACCCGUUAGAGAUGGUUUCAUAACAUCUUUGACGGGCUAGAUCUGUAUGGCCCGUCACAGGUAUCUAGUCACCUCUUAUGGGUCGAUAAUGGAACCCGUCUGACUAGAUACCUGUGACGGGCUGUAGCUGGAUGGCUCACCGAUGACGGCAUCCCAUAGAACCCGUCAAAGGUGAUCCUCAUCACUAACAAUAUUUAUGUCCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

270

LEP:

54.88%

ME_num:

140

MEP:

28.46%

HE_num:

81

HEP:

16.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.89

Avg Expression:

16.56

Tip: OSA-LNCN3642 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.383813824395870.0015505102527175
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.404298158666421.78798769988452e-12